Analysis of interatomic Contacts of Structural Units in PDB entry:
5VA1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VA1 entry

There is 1 chain in PDB entry 5VA1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ARG 863
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5VA1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
75 89Right-handed alpha
Helix 5
AA5
A
404 431Right-handed alpha
Helix 6
AA6
A
450 473Right-handed alpha
Helix 7
AA7
A
485 494Right-handed alpha
Helix 8
AA8
A
497 505Right-handed alpha
Helix 9
AA9
A
522 531Right-handed 310
Helix 10
AB1
A
532 538Right-handed alpha
Helix 11
AB2
A
538 543Right-handed alpha
Helix 12
AB3
A
545 575Right-handed alpha
Helix 13
AB4
A
584 593Right-handed alpha
Helix 14
AB5
A
606 623Right-handed alpha
Helix 15
AB6
A
634 667Right-handed alpha
Helix 16
AB7
A
668 688Right-handed alpha
Helix 17
AB8
A
690 709Right-handed alpha
Helix 18
AB9
A
712 718Right-handed alpha
Helix 19
AC1
A
721 733Right-handed alpha
Helix 20
AC2
A
733 740Right-handed alpha
Helix 21
AC3
A
747 758Right-handed alpha
Helix 22
AC4
A
808 813Right-handed alpha
Helix 23
AC5
A
834 845Right-handed alpha
Helix 24
AC6
A
845 856Right-handed alpha
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There are 3 sheets in PDB entry 5VA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
122 130anti-parallel
Strand 4
A
105 116anti-parallel
Strand 5
A
92 99anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
759 763first strand
Strand 2
A
828 832anti-parallel
Strand 3
A
780 782anti-parallel
Strand 4
A
803 806anti-parallel
Strand 5
A
860 861parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 770first strand
Strand 2
A
821 824anti-parallel
Strand 3
A
787 790anti-parallel
Strand 4
A
795 799anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il