Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VAI entry

There are 6 chains in PDB entry 5VAI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
THR 29ARG 421
P
HIS 7GLY 37
A
THR 9LEU 394
B
GLN 1ASN 340
G
ASN 5ARG 62
N
GLN 1SER 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5VAI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
R
31 53Right-handed alpha
Helix 2
AA2
R
123 127Right-handed 310
Helix 3
AA3
R
137 169Right-handed alpha
Helix 4
AA4
R
174 211Right-handed alpha
Helix 5
AA5
R
212 223Right-handed alpha
Helix 6
AA6
R
224 257Right-handed alpha
Helix 7
AA7
R
261 274Right-handed alpha
Helix 8
AA8
R
274 292Right-handed alpha
Helix 9
AA9
R
304 338Right-handed alpha
Helix 10
AB1
R
339 343Right-handed 310
Helix 11
AB2
R
345 355Right-handed alpha
Helix 12
AB3
R
356 361Right-handed alpha
Helix 13
AB4
R
364 369Right-handed alpha
Helix 14
AB5
R
379 403Right-handed alpha
Helix 15
AB6
R
406 421Right-handed alpha
Helix 16
AB7
P
8 34Right-handed alpha
Helix 17
AB8
A
10 40Right-handed alpha
Helix 18
AB9
A
54 59Right-handed alpha
Helix 19
AC1
A
233 238Right-handed 310
Helix 20
AC2
A
264 279Right-handed alpha
Helix 21
AC3
A
293 304Right-handed alpha
Helix 22
AC4
A
307 312Right-handed alpha
Helix 23
AC5
A
313 316Right-handed 310
Helix 24
AC6
A
331 353Right-handed alpha
Helix 25
AC7
A
371 391Right-handed alpha
Helix 26
AC8
B
2 25Right-handed alpha
Helix 27
AC9
B
29 34Right-handed alpha
Helix 28
AD1
G
8 24Right-handed alpha
Helix 29
AD2
G
29 45Right-handed alpha
Helix 30
AD3
G
46 48Right-handed 310
Helix 31
AD4
N
28 32Right-handed 310
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There are 12 sheets in PDB entry 5VAI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
65 66first strand
Strand 2
R
71 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
79 84first strand
Strand 2
R
99 104anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
210 214first strand
Strand 2
A
217 223anti-parallel
Strand 3
A
41 46parallel
Strand 4
A
243 249parallel
Strand 5
A
286 292parallel
Strand 6
A
359 360parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 52first strand
Strand 2
B
335 339anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
89 94anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
102 105first strand
Strand 2
B
111 115anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
135 139anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
166 170anti-parallel
Strand 4
B
175 180anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
218 222anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
260 264anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 308anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
3 6first strand
Strand 2
N
18 25anti-parallel
Strand 3
N
78 83anti-parallel
Strand 4
N
68 73anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
10 12first strand
Strand 2
N
122 126parallel
Strand 3
N
92 98anti-parallel
Strand 4
N
34 39anti-parallel
Strand 5
N
45 51anti-parallel
Strand 6
N
58 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il