Analysis of interatomic Contacts of Structural Units in PDB entry:
5VBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VBL entry

There are 4 chains in PDB entry 5VBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1PRO 7
A
 GLU 10LYS 13
A
 PRO 16PRO 16
B
 CYS 19ARG 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5VBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
29 56Right-handed alpha
Helix 2
AA2
B
57 61Right-handed 310
Helix 3
AA3
B
64 80Right-handed alpha
Helix 4
AA4
B
81 91Right-handed alpha
Helix 5
AA5
B
97 132Right-handed alpha
Helix 6
AA6
B
136 141Right-handed alpha
Helix 7
AA7
B
141 161Right-handed alpha
Helix 8
AA8
B
161 167Right-handed alpha
Helix 9
AA9
B
193 210Right-handed alpha
Helix 10
AB1
B
210 229Right-handed alpha
Helix 11
AB2
B
1019 1023Right-handed 310
Helix 12
AB3
B
1029 1033Right-handed 310
Helix 13
AB4
B
1045 1047Right-handed 310
Helix 14
AB5
B
244 276Right-handed alpha
Helix 15
AB6
B
280 313Right-handed alpha
Helix 16
AB7
B
313 326Right-handed alpha
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There are 2 sheets in PDB entry 5VBL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
180 183anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1012 1013first strand
Strand 2
B
1004 1006anti-parallel
Strand 3
B
1049 1051anti-parallel
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