Analysis of interatomic Contacts of Structural Units in PDB entry:
5VEX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VEX entry

There are 4 chains in PDB entry 5VEX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 136LEU 232
A
 GLN 234LEU 422
B
 SER 136LEU 232
B
 GLN 234LEU 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5VEX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 169Right-handed alpha
Helix 2
AA2
A
170 173Right-handed 310
Helix 3
AA3
A
174 200Right-handed alpha
Helix 4
AA4
A
223 257Right-handed alpha
Helix 5
AA5
A
1002 1011Right-handed alpha
Helix 6
AA6
A
1038 1051Right-handed alpha
Helix 7
AA7
A
1059 1081Right-handed alpha
Helix 8
AA8
A
1084 1091Right-handed alpha
Helix 9
AA9
A
1092 1106Right-handed alpha
Helix 10
AB1
A
1107 1112Right-handed alpha
Helix 11
AB2
A
1114 1123Right-handed alpha
Helix 12
AB3
A
1125 1135Right-handed alpha
Helix 13
AB4
A
1136 1142Right-handed alpha
Helix 14
AB5
A
1142 1156Right-handed alpha
Helix 15
AB6
A
1158 261Right-handed 310
Helix 16
AB7
A
262 274Right-handed alpha
Helix 17
AB8
A
274 291Right-handed alpha
Helix 18
AB9
A
303 305Right-handed 310
Helix 19
AC1
A
306 337Right-handed alpha
Helix 20
AC2
A
344 361Right-handed alpha
Helix 21
AC3
A
361 367Right-handed alpha
Helix 22
AC4
A
381 385Right-handed alpha
Helix 23
AC5
A
386 393Right-handed alpha
Helix 24
AC6
A
393 403Right-handed alpha
Helix 25
AC7
A
406 422Right-handed alpha
Helix 26
AC8
B
137 169Right-handed alpha
Helix 27
AC9
B
170 173Right-handed 310
Helix 28
AD1
B
174 200Right-handed alpha
Helix 29
AD2
B
223 257Right-handed alpha
Helix 30
AD3
B
1002 1011Right-handed alpha
Helix 31
AD4
B
1038 1051Right-handed alpha
Helix 32
AD5
B
1059 1081Right-handed alpha
Helix 33
AD6
B
1084 1091Right-handed alpha
Helix 34
AD7
B
1092 1106Right-handed alpha
Helix 35
AD8
B
1107 1112Right-handed alpha
Helix 36
AD9
B
1114 1123Right-handed alpha
Helix 37
AE1
B
1125 1135Right-handed alpha
Helix 38
AE2
B
1136 1142Right-handed alpha
Helix 39
AE3
B
1142 1156Right-handed alpha
Helix 40
AE4
B
1158 261Right-handed 310
Helix 41
AE5
B
262 274Right-handed alpha
Helix 42
AE6
B
274 292Right-handed alpha
Helix 43
AE7
B
303 305Right-handed 310
Helix 44
AE8
B
306 337Right-handed alpha
Helix 45
AE9
B
344 361Right-handed alpha
Helix 46
AF1
B
361 367Right-handed alpha
Helix 47
AF2
B
381 385Right-handed alpha
Helix 48
AF3
B
386 393Right-handed alpha
Helix 49
AF4
B
393 403Right-handed alpha
Helix 50
AF5
B
406 422Right-handed alpha
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There are 2 sheets in PDB entry 5VEX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1032anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1014 1019first strand
Strand 2
B
1025 1028anti-parallel
Strand 3
B
1031 1032anti-parallel
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