Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VHY entry

There are 6 chains in PDB entry 5VHY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	ALA 820
B	ASN 10	LYS 817
C	ASN 10	ALA 820
D	ASN 10	LYS 817
E	LYS 1	LYS 232
F	LYS 1	LYS 232

There are126 helices in PDB entry 5VHY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	36	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	81	93	Right-handed alpha
Helix 4	AA4	A	117	129	Right-handed alpha
Helix 5	AA5	A	143	156	Right-handed alpha
Helix 6	AA6	A	166	168	Right-handed 310
Helix 7	AA7	A	169	173	Right-handed 310
Helix 8	AA8	A	174	186	Right-handed alpha
Helix 9	AA9	A	197	212	Right-handed alpha
Helix 10	AB1	A	231	236	Right-handed 310
Helix 11	AB2	A	252	263	Right-handed alpha
Helix 12	AB3	A	279	303	Right-handed alpha
Helix 13	AB4	A	324	336	Right-handed alpha
Helix 14	AB5	A	416	419	Right-handed 310
Helix 15	AB6	A	423	437	Right-handed alpha
Helix 16	AB7	A	461	469	Right-handed alpha
Helix 17	AB8	A	482	487	Right-handed alpha
Helix 18	AB9	A	514	519	Right-handed alpha
Helix 19	AC1	A	522	544	Right-handed alpha
Helix 20	AC2	A	574	585	Right-handed alpha
Helix 21	AC3	A	597	630	Right-handed alpha
Helix 22	AC4	A	635	641	Right-handed alpha
Helix 23	AC5	A	653	661	Right-handed alpha
Helix 24	AC6	A	664	677	Right-handed alpha
Helix 25	AC7	A	685	697	Right-handed alpha
Helix 26	AC8	A	706	715	Right-handed alpha
Helix 27	AC9	A	742	757	Right-handed alpha
Helix 28	AD1	A	757	767	Right-handed alpha
Helix 29	AD2	A	775	782	Right-handed 310
Helix 30	AD3	A	788	820	Right-handed alpha
Helix 31	AD4	B	22	36	Right-handed alpha
Helix 32	AD5	B	54	69	Right-handed alpha
Helix 33	AD6	B	78	93	Right-handed alpha
Helix 34	AD7	B	117	129	Right-handed alpha
Helix 35	AD8	B	138	142	Right-handed 310
Helix 36	AD9	B	143	156	Right-handed alpha
Helix 37	AE1	B	174	187	Right-handed alpha
Helix 38	AE2	B	197	212	Right-handed alpha
Helix 39	AE3	B	231	236	Right-handed 310
Helix 40	AE4	B	252	263	Right-handed alpha
Helix 41	AE5	B	279	302	Right-handed alpha
Helix 42	AE6	B	323	334	Right-handed alpha
Helix 43	AE7	B	416	419	Right-handed 310
Helix 44	AE8	B	423	437	Right-handed alpha
Helix 45	AE9	B	461	469	Right-handed alpha
Helix 46	AF1	B	482	487	Right-handed alpha
Helix 47	AF2	B	522	544	Right-handed alpha
Helix 48	AF3	B	574	585	Right-handed alpha
Helix 49	AF4	B	598	626	Right-handed alpha
Helix 50	AF5	B	635	642	Right-handed alpha
Helix 51	AF6	B	653	661	Right-handed alpha
Helix 52	AF7	B	664	677	Right-handed alpha
Helix 53	AF8	B	685	697	Right-handed alpha
Helix 54	AF9	B	706	715	Right-handed alpha
Helix 55	AG1	B	742	756	Right-handed alpha
Helix 56	AG2	B	757	767	Right-handed alpha
Helix 57	AG3	B	774	781	Right-handed alpha
Helix 58	AG4	B	789	817	Right-handed alpha
Helix 59	AG5	C	22	36	Right-handed alpha
Helix 60	AG6	C	54	69	Right-handed alpha
Helix 61	AG7	C	81	93	Right-handed alpha
Helix 62	AG8	C	117	129	Right-handed alpha
Helix 63	AG9	C	143	157	Right-handed alpha
Helix 64	AH1	C	166	168	Right-handed 310
Helix 65	AH2	C	174	185	Right-handed alpha
Helix 66	AH3	C	197	212	Right-handed alpha
Helix 67	AH4	C	226	230	Right-handed 310
Helix 68	AH5	C	231	236	Right-handed 310
Helix 69	AH6	C	252	263	Right-handed alpha
Helix 70	AH7	C	279	303	Right-handed alpha
Helix 71	AH8	C	324	336	Right-handed alpha
Helix 72	AH9	C	416	419	Right-handed 310
Helix 73	AI1	C	423	437	Right-handed alpha
Helix 74	AI2	C	461	469	Right-handed alpha
Helix 75	AI3	C	482	487	Right-handed alpha
Helix 76	AI4	C	514	519	Right-handed alpha
Helix 77	AI5	C	522	544	Right-handed alpha
Helix 78	AI6	C	574	585	Right-handed alpha
Helix 79	AI7	C	598	630	Right-handed alpha
Helix 80	AI8	C	635	642	Right-handed alpha
Helix 81	AI9	C	653	662	Right-handed alpha
Helix 82	AJ1	C	664	677	Right-handed alpha
Helix 83	AJ2	C	685	695	Right-handed alpha
Helix 84	AJ3	C	706	714	Right-handed alpha
Helix 85	AJ4	C	742	757	Right-handed alpha
Helix 86	AJ5	C	757	768	Right-handed alpha
Helix 87	AJ6	C	775	782	Right-handed 310
Helix 88	AJ7	C	789	820	Right-handed alpha
Helix 89	AJ8	D	22	36	Right-handed alpha
Helix 90	AJ9	D	54	69	Right-handed alpha
Helix 91	AK1	D	81	93	Right-handed alpha
Helix 92	AK2	D	117	129	Right-handed alpha
Helix 93	AK3	D	138	142	Right-handed 310
Helix 94	AK4	D	143	157	Right-handed alpha
Helix 95	AK5	D	169	173	Right-handed 310
Helix 96	AK6	D	174	187	Right-handed alpha
Helix 97	AK7	D	197	212	Right-handed alpha
Helix 98	AK8	D	252	263	Right-handed alpha
Helix 99	AK9	D	279	302	Right-handed alpha
Helix 100	AL1	D	323	334	Right-handed alpha
Helix 101	AL2	D	416	419	Right-handed 310
Helix 102	AL3	D	423	437	Right-handed alpha
Helix 103	AL4	D	461	469	Right-handed alpha
Helix 104	AL5	D	482	487	Right-handed alpha
Helix 105	AL6	D	513	517	Right-handed 310
Helix 106	AL7	D	522	544	Right-handed alpha
Helix 107	AL8	D	574	585	Right-handed alpha
Helix 108	AL9	D	597	626	Right-handed alpha
Helix 109	AM1	D	635	642	Right-handed alpha
Helix 110	AM2	D	653	662	Right-handed alpha
Helix 111	AM3	D	664	677	Right-handed alpha
Helix 112	AM4	D	685	697	Right-handed alpha
Helix 113	AM5	D	706	715	Right-handed alpha
Helix 114	AM6	D	742	756	Right-handed alpha
Helix 115	AM7	D	757	767	Right-handed alpha
Helix 116	AM8	D	768	771	Right-handed 310
Helix 117	AM9	D	774	781	Right-handed alpha
Helix 118	AN1	D	789	817	Right-handed alpha
Helix 119	AN2	E	2	27	Right-handed alpha
Helix 120	AN3	E	118	152	Right-handed alpha
Helix 121	AN4	E	158	193	Right-handed alpha
Helix 122	AN5	E	207	231	Right-handed alpha
Helix 123	AN6	F	2	27	Right-handed alpha
Helix 124	AN7	F	118	152	Right-handed alpha
Helix 125	AN8	F	158	193	Right-handed alpha
Helix 126	AN9	F	206	231	Right-handed alpha

There are 40 sheets in PDB entry 5VHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	43	46	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	96	98	parallel
Strand 3	A	111	112	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	132	137	parallel
Strand 3	A	191	195	parallel
Strand 4	A	219	222	parallel
Strand 5	A	241	246	parallel
Strand 6	A	357	364	anti-parallel
Strand 7	A	367	375	anti-parallel
Strand 8	A	379	382	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	343	345	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	735	736	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	17	first strand
Strand 2	B	42	48	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	96	97	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	134	137	parallel
Strand 3	B	191	194	parallel
Strand 4	B	219	222	parallel
Strand 5	B	241	246	parallel
Strand 6	B	357	362	anti-parallel
Strand 7	B	369	375	anti-parallel
Strand 8	B	379	382	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	353	354	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	444	first strand
Strand 2	B	396	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	17	first strand
Strand 2	C	42	48	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	96	98	parallel
Strand 3	C	111	112	parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	132	137	parallel
Strand 3	C	191	195	parallel
Strand 4	C	219	222	parallel
Strand 5	C	241	246	parallel
Strand 6	C	357	362	anti-parallel
Strand 7	C	369	375	anti-parallel
Strand 8	C	379	382	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	340	first strand
Strand 2	C	343	347	anti-parallel
Strand 3	C	353	354	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	735	736	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	17	first strand
Strand 2	D	42	48	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	96	97	parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	134	137	parallel
Strand 3	D	191	194	parallel
Strand 4	D	219	222	parallel
Strand 5	D	241	246	parallel
Strand 6	D	357	364	anti-parallel
Strand 7	D	367	375	anti-parallel
Strand 8	D	379	382	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	343	344	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	353	354	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	444	first strand
Strand 2	D	396	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	89	92	anti-parallel
Strand 3	E	97	100	anti-parallel
Strand 4	E	108	109	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	89	92	anti-parallel
Strand 3	F	97	100	anti-parallel
Strand 4	F	108	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VHY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHY