Analysis of interatomic Contacts of Structural Units in PDB entry:
5VMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VMS entry

There are 2 chains in PDB entry 5VMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 94LEU 556
B
 THR 6MET 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5VMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 105Right-handed alpha
Helix 2
AA2
A
109 135Right-handed alpha
Helix 3
AA3
A
136 138Right-handed 310
Helix 4
AA4
A
139 168Right-handed alpha
Helix 5
AA5
A
169 171Right-handed 310
Helix 6
AA6
A
175 186Right-handed alpha
Helix 7
AA7
A
188 206Right-handed alpha
Helix 8
AA8
A
218 228Right-handed alpha
Helix 9
AA9
A
229 232Right-handed 310
Helix 10
AB1
A
235 248Right-handed alpha
Helix 11
AB2
A
248 274Right-handed alpha
Helix 12
AB3
A
288 302Right-handed alpha
Helix 13
AB4
A
312 350Right-handed alpha
Helix 14
AB5
A
353 355Right-handed 310
Helix 15
AB6
A
356 376Right-handed alpha
Helix 16
AB7
A
498 523Right-handed alpha
Helix 17
AB8
A
526 556Right-handed alpha
Helix 18
AB9
B
7 22Right-handed alpha
Helix 19
AC1
B
29 41Right-handed alpha
Helix 20
AC2
B
45 57Right-handed alpha
Helix 21
AC3
B
65 75Right-handed alpha
Helix 22
AC4
B
79 94Right-handed alpha
Helix 23
AC5
B
102 113Right-handed alpha
Helix 24
AC6
B
118 130Right-handed alpha
Helix 25
AC7
B
138 146Right-handed alpha
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There are no sheets in PDB entry 5VMS
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il