Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VXZ entry

There are 4 chains in PDB entry 5VXZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 281	PRO 675
B	LEU 281	PRO 675
C	GLU 27	LEU 128
D	GLU 27	LEU 128

There are 14 helices in PDB entry 5VXZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	429	433	Right-handed 310
Helix 2	AA2	A	456	464	Right-handed alpha
Helix 3	AA3	A	465	469	Right-handed 310
Helix 4	AA4	A	568	572	Right-handed 310
Helix 5	AA5	A	600	616	Right-handed alpha
Helix 6	AA6	A	630	634	Right-handed 310
Helix 7	AA7	A	654	658	Right-handed 310
Helix 8	AA8	B	429	433	Right-handed 310
Helix 9	AA9	B	456	464	Right-handed alpha
Helix 10	AB1	B	465	469	Right-handed 310
Helix 11	AB2	B	600	615	Right-handed alpha
Helix 12	AB3	B	654	658	Right-handed 310
Helix 13	AB4	C	101	105	Right-handed 310
Helix 14	AB5	D	101	105	Right-handed 310

There are 16 sheets in PDB entry 5VXZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	443	450	anti-parallel
Strand 3	A	320	327	anti-parallel
Strand 4	A	380	387	anti-parallel
Strand 5	A	390	395	anti-parallel
Strand 6	A	398	404	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	370	first strand
Strand 2	A	354	361	anti-parallel
Strand 3	A	345	351	anti-parallel
Strand 4	A	332	338	anti-parallel
Strand 5	A	416	423	anti-parallel
Strand 6	A	411	413	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	370	first strand
Strand 2	A	354	361	anti-parallel
Strand 3	A	345	351	anti-parallel
Strand 4	A	332	338	anti-parallel
Strand 5	A	416	423	anti-parallel
Strand 6	A	307	313	anti-parallel
Strand 7	C	73	80	anti-parallel
Strand 8	C	88	97	anti-parallel
Strand 9	C	45	54	anti-parallel
Strand 10	C	30	32	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	480	first strand
Strand 2	A	642	648	anti-parallel
Strand 3	A	507	515	anti-parallel
Strand 4	A	575	582	anti-parallel
Strand 5	A	585	590	anti-parallel
Strand 6	A	593	594	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	480	first strand
Strand 2	A	642	648	anti-parallel
Strand 3	A	651	652	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	597	first strand
Strand 2	A	560	566	anti-parallel
Strand 3	A	552	557	anti-parallel
Strand 4	A	532	540	anti-parallel
Strand 5	A	520	527	anti-parallel
Strand 6	A	620	623	anti-parallel
Strand 7	A	486	488	anti-parallel
Strand 8	A	660	661	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	443	450	anti-parallel
Strand 3	B	320	327	anti-parallel
Strand 4	B	380	387	anti-parallel
Strand 5	B	390	395	anti-parallel
Strand 6	B	398	404	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	370	first strand
Strand 2	B	354	361	anti-parallel
Strand 3	B	345	351	anti-parallel
Strand 4	B	332	338	anti-parallel
Strand 5	B	416	423	anti-parallel
Strand 6	B	411	413	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	370	first strand
Strand 2	B	354	361	anti-parallel
Strand 3	B	345	351	anti-parallel
Strand 4	B	332	338	anti-parallel
Strand 5	B	416	423	anti-parallel
Strand 6	B	307	313	anti-parallel
Strand 7	D	74	80	anti-parallel
Strand 8	D	88	97	anti-parallel
Strand 9	D	45	54	anti-parallel
Strand 10	D	30	32	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	480	first strand
Strand 2	B	642	648	anti-parallel
Strand 3	B	507	515	anti-parallel
Strand 4	B	575	582	anti-parallel
Strand 5	B	585	590	anti-parallel
Strand 6	B	593	594	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	480	first strand
Strand 2	B	642	648	anti-parallel
Strand 3	B	651	652	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	597	first strand
Strand 2	B	560	566	anti-parallel
Strand 3	B	552	557	anti-parallel
Strand 4	B	532	540	anti-parallel
Strand 5	B	520	527	anti-parallel
Strand 6	B	620	623	anti-parallel
Strand 7	B	486	488	anti-parallel
Strand 8	B	660	661	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	124	127	parallel
Strand 3	C	106	114	anti-parallel
Strand 4	C	61	64	anti-parallel
Strand 5	C	67	68	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	124	127	parallel
Strand 3	C	106	114	anti-parallel
Strand 4	C	117	120	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	124	127	parallel
Strand 3	D	106	114	anti-parallel
Strand 4	D	61	64	anti-parallel
Strand 5	D	67	68	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	124	127	parallel
Strand 3	D	106	114	anti-parallel
Strand 4	D	117	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VXZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXZ