Analysis of interatomic Contacts of Structural Units in PDB entry:
5W81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W81 entry

There is 1 chain in PDB entry 5W81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 1458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5W81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
20 30Right-handed alpha
Helix 3
AA3
A
45 63Right-handed alpha
Helix 4
AA4
A
69 98Right-handed alpha
Helix 5
AA5
A
98 109Right-handed alpha
Helix 6
AA6
A
119 166Right-handed alpha
Helix 7
AA7
A
169 174Right-handed alpha
Helix 8
AA8
A
177 195Right-handed alpha
Helix 9
AA9
A
195 200Right-handed alpha
Helix 10
AB1
A
200 217Right-handed alpha
Helix 11
AB2
A
221 269Right-handed alpha
Helix 12
AB3
A
269 277Right-handed alpha
Helix 13
AB4
A
279 329Right-handed alpha
Helix 14
AB5
A
335 353Right-handed alpha
Helix 15
AB6
A
353 377Right-handed alpha
Helix 16
AB7
A
462 472Right-handed alpha
Helix 17
AB8
A
500 507Right-handed alpha
Helix 18
AB9
A
513 523Right-handed alpha
Helix 19
AC1
A
525 531Right-handed alpha
Helix 20
AC2
A
548 563Right-handed alpha
Helix 21
AC3
A
578 589Right-handed alpha
Helix 22
AC4
A
605 612Right-handed alpha
Helix 23
AC5
A
628 635Right-handed alpha
Helix 24
AC6
A
845 854Right-handed alpha
Helix 25
AC7
A
854 886Right-handed alpha
Helix 26
AC8
A
921 935Right-handed alpha
Helix 27
AC9
A
938 966Right-handed alpha
Helix 28
AD1
A
968 975Right-handed alpha
Helix 29
AD2
A
976 994Right-handed alpha
Helix 30
AD3
A
994 1019Right-handed alpha
Helix 31
AD4
A
1022 1056Right-handed alpha
Helix 32
AD5
A
1056 1069Right-handed alpha
Helix 33
AD6
A
1069 1076Right-handed alpha
Helix 34
AD7
A
1078 1126Right-handed alpha
Helix 35
AD8
A
1137 1148Right-handed alpha
Helix 36
AD9
A
1150 1166Right-handed alpha
Helix 37
AE1
A
1166 1176Right-handed alpha
Helix 38
AE2
A
1250 1259Right-handed alpha
Helix 39
AE3
A
1279 1286Right-handed alpha
Helix 40
AE4
A
1300 1306Right-handed alpha
Helix 41
AE5
A
1312 1323Right-handed alpha
Helix 42
AE6
A
1325 1331Right-handed alpha
Helix 43
AE7
A
1348 1364Right-handed alpha
Helix 44
AE8
A
1378 1393Right-handed alpha
Helix 45
AE9
A
1407 1411Right-handed 310
Helix 46
AF1
A
1427 1435Right-handed alpha
Helix 47
AF2
A
1446 1451Right-handed alpha
Helix 48
AF3
A
1452 1457Right-handed alpha
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There are 5 sheets in PDB entry 5W81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 446first strand
Strand 2
A
394 400anti-parallel
Strand 3
A
478 482anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 490first strand
Strand 2
A
567 570parallel
Strand 3
A
598 602parallel
Strand 4
A
452 456parallel
Strand 5
A
614 619parallel
Strand 6
A
622 627anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1228 1235first strand
Strand 2
A
1211 1219anti-parallel
Strand 3
A
1263 1264anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1228 1235first strand
Strand 2
A
1211 1219anti-parallel
Strand 3
A
1269 1270anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1287 1290first strand
Strand 2
A
1367 1371parallel
Strand 3
A
1397 1401parallel
Strand 4
A
1240 1245parallel
Strand 5
A
1413 1417parallel
Strand 6
A
1422 1425anti-parallel
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