Analysis of interatomic Contacts of Structural Units in PDB entry:
5WPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WPT entry

There are 4 chains in PDB entry 5WPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 38PRO 527
B
 GLU 38PRO 527
C
 GLU 38PRO 527
D
 GLU 38PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 5WPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 49Right-handed alpha
Helix 2
AA2
A
51 57Right-handed alpha
Helix 3
AA3
A
63 106Right-handed alpha
Helix 4
AA4
A
122 138Right-handed alpha
Helix 5
AA5
A
139 142Right-handed 310
Helix 6
AA6
A
242 246Right-handed 310
Helix 7
AA7
A
297 337Right-handed alpha
Helix 8
AA8
A
343 348Right-handed alpha
Helix 9
AA9
A
349 351Right-handed 310
Helix 10
AB1
A
354 376Right-handed alpha
Helix 11
AB2
A
384 400Right-handed alpha
Helix 12
AB3
A
401 407Right-handed 310
Helix 13
AB4
A
415 419Right-handed 310
Helix 14
AB5
A
420 447Right-handed alpha
Helix 15
AB6
A
456 470Right-handed alpha
Helix 16
AB7
A
472 483Right-handed alpha
Helix 17
AB8
A
484 487Right-handed 310
Helix 18
AB9
A
489 507Right-handed alpha
Helix 19
AC1
A
509 526Right-handed alpha
Helix 20
AC2
B
39 49Right-handed alpha
Helix 21
AC3
B
51 57Right-handed alpha
Helix 22
AC4
B
63 106Right-handed alpha
Helix 23
AC5
B
122 138Right-handed alpha
Helix 24
AC6
B
139 142Right-handed 310
Helix 25
AC7
B
242 246Right-handed 310
Helix 26
AC8
B
297 337Right-handed alpha
Helix 27
AC9
B
343 348Right-handed alpha
Helix 28
AD1
B
349 351Right-handed 310
Helix 29
AD2
B
354 376Right-handed alpha
Helix 30
AD3
B
384 400Right-handed alpha
Helix 31
AD4
B
401 407Right-handed 310
Helix 32
AD5
B
415 419Right-handed 310
Helix 33
AD6
B
420 447Right-handed alpha
Helix 34
AD7
B
456 470Right-handed alpha
Helix 35
AD8
B
472 483Right-handed alpha
Helix 36
AD9
B
484 487Right-handed 310
Helix 37
AE1
B
489 507Right-handed alpha
Helix 38
AE2
B
509 526Right-handed alpha
Helix 39
AE3
C
39 49Right-handed alpha
Helix 40
AE4
C
51 57Right-handed alpha
Helix 41
AE5
C
63 106Right-handed alpha
Helix 42
AE6
C
122 138Right-handed alpha
Helix 43
AE7
C
139 142Right-handed 310
Helix 44
AE8
C
242 246Right-handed 310
Helix 45
AE9
C
297 337Right-handed alpha
Helix 46
AF1
C
343 348Right-handed alpha
Helix 47
AF2
C
349 351Right-handed 310
Helix 48
AF3
C
354 376Right-handed alpha
Helix 49
AF4
C
384 400Right-handed alpha
Helix 50
AF5
C
401 407Right-handed 310
Helix 51
AF6
C
415 419Right-handed 310
Helix 52
AF7
C
420 447Right-handed alpha
Helix 53
AF8
C
456 470Right-handed alpha
Helix 54
AF9
C
472 483Right-handed alpha
Helix 55
AG1
C
484 487Right-handed 310
Helix 56
AG2
C
489 507Right-handed alpha
Helix 57
AG3
C
509 526Right-handed alpha
Helix 58
AG4
D
39 49Right-handed alpha
Helix 59
AG5
D
51 57Right-handed alpha
Helix 60
AG6
D
63 106Right-handed alpha
Helix 61
AG7
D
122 138Right-handed alpha
Helix 62
AG8
D
139 142Right-handed 310
Helix 63
AG9
D
242 246Right-handed 310
Helix 64
AH1
D
297 337Right-handed alpha
Helix 65
AH2
D
343 348Right-handed alpha
Helix 66
AH3
D
349 351Right-handed 310
Helix 67
AH4
D
354 376Right-handed alpha
Helix 68
AH5
D
384 400Right-handed alpha
Helix 69
AH6
D
401 407Right-handed 310
Helix 70
AH7
D
415 419Right-handed 310
Helix 71
AH8
D
420 447Right-handed alpha
Helix 72
AH9
D
456 470Right-handed alpha
Helix 73
AI1
D
472 483Right-handed alpha
Helix 74
AI2
D
484 487Right-handed 310
Helix 75
AI3
D
489 507Right-handed alpha
Helix 76
AI4
D
509 526Right-handed alpha
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There are 4 sheets in PDB entry 5WPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
271 276anti-parallel
Strand 3
A
253 263anti-parallel
Strand 4
A
228 240anti-parallel
Strand 5
A
163 172anti-parallel
Strand 6
A
185 195anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
271 276anti-parallel
Strand 3
B
253 263anti-parallel
Strand 4
B
228 240anti-parallel
Strand 5
B
163 172anti-parallel
Strand 6
B
185 195anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 119first strand
Strand 2
C
271 276anti-parallel
Strand 3
C
253 263anti-parallel
Strand 4
C
228 240anti-parallel
Strand 5
C
163 172anti-parallel
Strand 6
C
185 195anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 119first strand
Strand 2
D
271 276anti-parallel
Strand 3
D
253 263anti-parallel
Strand 4
D
228 240anti-parallel
Strand 5
D
163 172anti-parallel
Strand 6
D
185 195anti-parallel
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