Analysis of interatomic Contacts of Structural Units in PDB entry:
5WQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WQD entry

There are 7 chains in PDB entry 5WQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 44LYS 245
B
 ALA 43LEU 244
C
 GLY 42LYS 245
D
 ALA 43LYS 245
E
 ALA 46ALA 243
F
 ALA 43LEU 244
G
 ALA 43HIS 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 5WQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 70Right-handed alpha
Helix 2
AA2
A
72 88Right-handed alpha
Helix 3
AA3
A
94 112Right-handed alpha
Helix 4
AA4
A
127 143Right-handed alpha
Helix 5
AA5
A
146 168Right-handed alpha
Helix 6
AA6
A
170 181Right-handed alpha
Helix 7
AA7
A
185 202Right-handed alpha
Helix 8
AA8
A
206 211Right-handed alpha
Helix 9
AA9
A
213 228Right-handed alpha
Helix 10
AB1
A
234 244Right-handed alpha
Helix 11
AB2
B
45 70Right-handed alpha
Helix 12
AB3
B
72 88Right-handed alpha
Helix 13
AB4
B
95 112Right-handed alpha
Helix 14
AB5
B
127 143Right-handed alpha
Helix 15
AB6
B
146 168Right-handed alpha
Helix 16
AB7
B
170 182Right-handed alpha
Helix 17
AB8
B
185 187Right-handed 310
Helix 18
AB9
B
188 202Right-handed alpha
Helix 19
AC1
B
206 211Right-handed alpha
Helix 20
AC2
B
213 228Right-handed alpha
Helix 21
AC3
B
234 243Right-handed alpha
Helix 22
AC4
C
43 70Right-handed alpha
Helix 23
AC5
C
72 87Right-handed alpha
Helix 24
AC6
C
94 112Right-handed alpha
Helix 25
AC7
C
127 144Right-handed alpha
Helix 26
AC8
C
146 168Right-handed alpha
Helix 27
AC9
C
170 182Right-handed alpha
Helix 28
AD1
C
185 202Right-handed alpha
Helix 29
AD2
C
206 211Right-handed alpha
Helix 30
AD3
C
213 227Right-handed alpha
Helix 31
AD4
C
234 244Right-handed alpha
Helix 32
AD5
D
44 70Right-handed alpha
Helix 33
AD6
D
72 85Right-handed alpha
Helix 34
AD7
D
95 112Right-handed alpha
Helix 35
AD8
D
127 143Right-handed alpha
Helix 36
AD9
D
146 168Right-handed alpha
Helix 37
AE1
D
170 183Right-handed alpha
Helix 38
AE2
D
185 202Right-handed alpha
Helix 39
AE3
D
206 211Right-handed alpha
Helix 40
AE4
D
213 226Right-handed alpha
Helix 41
AE5
D
227 229Right-handed 310
Helix 42
AE6
D
234 244Right-handed alpha
Helix 43
AE7
E
48 70Right-handed alpha
Helix 44
AE8
E
72 88Right-handed alpha
Helix 45
AE9
E
94 112Right-handed alpha
Helix 46
AF1
E
121 125Right-handed 310
Helix 47
AF2
E
127 143Right-handed alpha
Helix 48
AF3
E
146 168Right-handed alpha
Helix 49
AF4
E
170 182Right-handed alpha
Helix 50
AF5
E
188 202Right-handed alpha
Helix 51
AF6
E
206 211Right-handed alpha
Helix 52
AF7
E
213 227Right-handed alpha
Helix 53
AF8
E
235 243Right-handed alpha
Helix 54
AF9
F
44 70Right-handed alpha
Helix 55
AG1
F
72 87Right-handed alpha
Helix 56
AG2
F
94 112Right-handed alpha
Helix 57
AG3
F
113 115Right-handed 310
Helix 58
AG4
F
127 143Right-handed alpha
Helix 59
AG5
F
146 168Right-handed alpha
Helix 60
AG6
F
170 176Right-handed alpha
Helix 61
AG7
F
191 202Right-handed alpha
Helix 62
AG8
F
206 211Right-handed alpha
Helix 63
AG9
F
213 226Right-handed alpha
Helix 64
AH1
F
227 229Right-handed 310
Helix 65
AH2
F
234 243Right-handed alpha
Helix 66
AH3
G
49 70Right-handed alpha
Helix 67
AH4
G
72 87Right-handed alpha
Helix 68
AH5
G
95 112Right-handed alpha
Helix 69
AH6
G
127 143Right-handed alpha
Helix 70
AH7
G
146 151Right-handed alpha
Helix 71
AH8
G
153 168Right-handed alpha
Helix 72
AH9
G
170 181Right-handed alpha
Helix 73
AI1
G
188 202Right-handed alpha
Helix 74
AI2
G
206 211Right-handed alpha
Helix 75
AI3
G
213 228Right-handed alpha
Helix 76
AI4
G
236 240Right-handed 310
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There are 4 sheets in PDB entry 5WQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
H
434 435anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
I
434 435anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 119first strand
Strand 2
J
434 435anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 119first strand
Strand 2
K
434 435anti-parallel
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