Analysis of interatomic Contacts of Structural Units in PDB entry:
5X1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X1V entry

There are 3 chains in PDB entry 5X1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 14PRO 531
B
GLN 14PRO 531
C
GLN 14ALA 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 5X1V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
17 22Right-handed alpha
Helix 2
AA2
A
25 32Right-handed alpha
Helix 3
AA3
A
57 68Right-handed alpha
Helix 4
AA4
A
80 97Right-handed alpha
Helix 5
AA5
A
145 150Right-handed 310
Helix 6
AA6
A
222 235Right-handed alpha
Helix 7
AA7
A
247 259Right-handed alpha
Helix 8
AA8
A
273 279Right-handed alpha
Helix 9
AA9
A
279 287Right-handed alpha
Helix 10
AB1
A
294 301Right-handed alpha
Helix 11
AB2
A
302 304Right-handed 310
Helix 12
AB3
A
305 321Right-handed alpha
Helix 13
AB4
A
331 336Right-handed 310
Helix 14
AB5
A
341 355Right-handed alpha
Helix 15
AB6
A
362 367Right-handed alpha
Helix 16
AB7
A
370 388Right-handed alpha
Helix 17
AB8
A
390 401Right-handed alpha
Helix 18
AB9
A
407 423Right-handed alpha
Helix 19
AC1
A
435 443Right-handed alpha
Helix 20
AC2
A
456 463Right-handed alpha
Helix 21
AC3
A
464 466Right-handed 310
Helix 22
AC4
A
481 500Right-handed alpha
Helix 23
AC5
B
17 22Right-handed alpha
Helix 24
AC6
B
25 32Right-handed alpha
Helix 25
AC7
B
57 68Right-handed alpha
Helix 26
AC8
B
80 97Right-handed alpha
Helix 27
AC9
B
145 149Right-handed 310
Helix 28
AD1
B
163 168Right-handed alpha
Helix 29
AD2
B
222 235Right-handed alpha
Helix 30
AD3
B
247 259Right-handed alpha
Helix 31
AD4
B
273 279Right-handed alpha
Helix 32
AD5
B
279 287Right-handed alpha
Helix 33
AD6
B
294 301Right-handed alpha
Helix 34
AD7
B
302 304Right-handed 310
Helix 35
AD8
B
305 321Right-handed alpha
Helix 36
AD9
B
331 336Right-handed 310
Helix 37
AE1
B
341 355Right-handed alpha
Helix 38
AE2
B
362 367Right-handed alpha
Helix 39
AE3
B
370 388Right-handed alpha
Helix 40
AE4
B
390 402Right-handed alpha
Helix 41
AE5
B
407 423Right-handed alpha
Helix 42
AE6
B
435 443Right-handed alpha
Helix 43
AE7
B
456 463Right-handed alpha
Helix 44
AE8
B
464 466Right-handed 310
Helix 45
AE9
B
481 500Right-handed alpha
Helix 46
AF1
C
17 22Right-handed alpha
Helix 47
AF2
C
25 32Right-handed alpha
Helix 48
AF3
C
57 68Right-handed alpha
Helix 49
AF4
C
80 97Right-handed alpha
Helix 50
AF5
C
145 149Right-handed 310
Helix 51
AF6
C
163 168Right-handed alpha
Helix 52
AF7
C
222 235Right-handed alpha
Helix 53
AF8
C
247 259Right-handed alpha
Helix 54
AF9
C
273 279Right-handed alpha
Helix 55
AG1
C
279 287Right-handed alpha
Helix 56
AG2
C
294 301Right-handed alpha
Helix 57
AG3
C
302 304Right-handed 310
Helix 58
AG4
C
305 321Right-handed alpha
Helix 59
AG5
C
331 336Right-handed 310
Helix 60
AG6
C
341 355Right-handed alpha
Helix 61
AG7
C
362 367Right-handed alpha
Helix 62
AG8
C
370 388Right-handed alpha
Helix 63
AG9
C
390 400Right-handed alpha
Helix 64
AH1
C
407 424Right-handed alpha
Helix 65
AH2
C
435 443Right-handed alpha
Helix 66
AH3
C
456 463Right-handed alpha
Helix 67
AH4
C
464 466Right-handed 310
Helix 68
AH5
C
481 500Right-handed alpha
Helix 69
AH6
D
17 22Right-handed alpha
Helix 70
AH7
D
25 32Right-handed alpha
Helix 71
AH8
D
57 68Right-handed alpha
Helix 72
AH9
D
80 97Right-handed alpha
Helix 73
AI1
D
145 149Right-handed 310
Helix 74
AI2
D
163 168Right-handed alpha
Helix 75
AI3
D
222 235Right-handed alpha
Helix 76
AI4
D
247 259Right-handed alpha
Helix 77
AI5
D
273 279Right-handed alpha
Helix 78
AI6
D
279 287Right-handed alpha
Helix 79
AI7
D
294 301Right-handed alpha
Helix 80
AI8
D
302 304Right-handed 310
Helix 81
AI9
D
305 321Right-handed alpha
Helix 82
AJ1
D
331 336Right-handed 310
Helix 83
AJ2
D
341 355Right-handed alpha
Helix 84
AJ3
D
362 367Right-handed alpha
Helix 85
AJ4
D
370 388Right-handed alpha
Helix 86
AJ5
D
390 402Right-handed alpha
Helix 87
AJ6
D
407 424Right-handed alpha
Helix 88
AJ7
D
435 443Right-handed alpha
Helix 89
AJ8
D
456 463Right-handed alpha
Helix 90
AJ9
D
464 466Right-handed 310
Helix 91
AK1
D
481 500Right-handed alpha
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There are 14 sheets in PDB entry 5X1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 50first strand
Strand 2
A
71 75parallel
Strand 3
A
109 113parallel
Strand 4
A
239 242parallel
Strand 5
A
266 271parallel
Strand 6
A
289 293parallel
Strand 7
A
324 327parallel
Strand 8
A
358 361parallel
Strand 9
A
46 50parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 120first strand
Strand 2
A
208 210anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
181 185anti-parallel
Strand 5
A
194 199anti-parallel
Strand 6
A
139 143anti-parallel
Strand 7
A
156 158parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 134first strand
Strand 2
A
201 203anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
469 473first strand
Strand 2
A
450 454parallel
Strand 3
A
428 431parallel
Strand 4
A
508 514parallel
Strand 5
A
522 529anti-parallel
Strand 6
C
522 529anti-parallel
Strand 7
C
508 514anti-parallel
Strand 8
C
428 431parallel
Strand 9
C
450 454parallel
Strand 10
C
469 473parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 50first strand
Strand 2
B
71 75parallel
Strand 3
B
109 113parallel
Strand 4
B
239 242parallel
Strand 5
B
266 271parallel
Strand 6
B
289 293parallel
Strand 7
B
324 327parallel
Strand 8
B
358 361parallel
Strand 9
B
46 50parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 120first strand
Strand 2
B
208 210anti-parallel
Strand 3
B
173 176anti-parallel
Strand 4
B
181 188anti-parallel
Strand 5
B
192 199anti-parallel
Strand 6
B
139 143anti-parallel
Strand 7
B
156 158parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
132 134first strand
Strand 2
B
201 203anti-parallel
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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
469 473first strand
Strand 2
B
450 454parallel
Strand 3
B
428 431parallel
Strand 4
B
508 514parallel
Strand 5
B
522 529anti-parallel
Strand 6
D
522 529anti-parallel
Strand 7
D
508 514anti-parallel
Strand 8
D
428 431parallel
Strand 9
D
450 454parallel
Strand 10
D
469 473parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
46 50first strand
Strand 2
C
71 75parallel
Strand 3
C
109 113parallel
Strand 4
C
239 242parallel
Strand 5
C
266 271parallel
Strand 6
C
289 293parallel
Strand 7
C
324 327parallel
Strand 8
C
358 361parallel
Strand 9
C
46 50parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
132 134first strand
Strand 2
C
201 203anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
156 158first strand
Strand 2
C
139 143parallel
Strand 3
C
192 199anti-parallel
Strand 4
C
181 188anti-parallel
Strand 5
C
173 176anti-parallel
Strand 6
C
209 210anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 50first strand
Strand 2
D
71 75parallel
Strand 3
D
109 113parallel
Strand 4
D
239 242parallel
Strand 5
D
266 271parallel
Strand 6
D
289 293parallel
Strand 7
D
324 327parallel
Strand 8
D
358 361parallel
Strand 9
D
46 50parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
132 134first strand
Strand 2
D
201 203anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
156 158first strand
Strand 2
D
139 143parallel
Strand 3
D
192 199anti-parallel
Strand 4
D
181 188anti-parallel
Strand 5
D
173 176anti-parallel
Strand 6
D
209 210anti-parallel
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