Analysis of interatomic Contacts of Structural Units in PDB entry:
5X6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X6E entry

There are 12 chains in PDB entry 5X6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
ASN 2ASN 237
N
ASN 2ASN 237
O
C 1 C 29
P
G 2 T 29
A
ASN 2ASN 237
B
ASN 2ASN 237
C
C 1 C 29
D
G 1 T 29
E
ASN 2ASN 237
F
ASN 2ASN 237
G
A 2 C 29
H
G 1 T 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5X6E. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
M
3 15Right-handed alpha
Helix 2
AA2
M
102 108Right-handed alpha
Helix 3
AA3
M
109 137Right-handed alpha
Helix 4
AA4
M
138 154Right-handed alpha
Helix 5
AA5
M
170 178Right-handed alpha
Helix 6
AA6
M
182 191Right-handed alpha
Helix 7
AA7
M
211 218Right-handed alpha
Helix 8
AA8
M
218 229Right-handed alpha
Helix 9
AA9
M
229 235Right-handed alpha
Helix 10
AB1
N
5 10Right-handed alpha
Helix 11
AB2
N
99 103Right-handed alpha
Helix 12
AB3
N
109 137Right-handed alpha
Helix 13
AB4
N
137 154Right-handed alpha
Helix 14
AB5
N
170 178Right-handed alpha
Helix 15
AB6
N
182 194Right-handed alpha
Helix 16
AB7
N
201 205Right-handed 310
Helix 17
AB8
N
210 218Right-handed alpha
Helix 18
AB9
N
218 228Right-handed alpha
Helix 19
AC1
N
229 236Right-handed alpha
Helix 20
AC2
A
4 8Right-handed 310
Helix 21
AC3
A
101 109Right-handed alpha
Helix 22
AC4
A
109 136Right-handed alpha
Helix 23
AC5
A
137 154Right-handed alpha
Helix 24
AC6
A
170 178Right-handed alpha
Helix 25
AC7
A
182 196Right-handed alpha
Helix 26
AC8
A
211 218Right-handed alpha
Helix 27
AC9
A
218 228Right-handed alpha
Helix 28
AD1
A
229 236Right-handed alpha
Helix 29
AD2
B
5 12Right-handed alpha
Helix 30
AD3
B
100 102Right-handed 310
Helix 31
AD4
B
112 137Right-handed alpha
Helix 32
AD5
B
137 154Right-handed alpha
Helix 33
AD6
B
170 178Right-handed alpha
Helix 34
AD7
B
182 188Right-handed alpha
Helix 35
AD8
B
190 195Right-handed alpha
Helix 36
AD9
B
211 218Right-handed alpha
Helix 37
AE1
B
218 228Right-handed alpha
Helix 38
AE2
B
229 236Right-handed alpha
Helix 39
AE3
E
5 10Right-handed alpha
Helix 40
AE4
E
99 109Right-handed alpha
Helix 41
AE5
E
112 136Right-handed alpha
Helix 42
AE6
E
138 154Right-handed alpha
Helix 43
AE7
E
170 178Right-handed alpha
Helix 44
AE8
E
182 194Right-handed alpha
Helix 45
AE9
E
211 218Right-handed alpha
Helix 46
AF1
E
223 228Right-handed alpha
Helix 47
AF2
E
229 237Right-handed alpha
Helix 48
AF3
F
3 15Right-handed alpha
Helix 49
AF4
F
99 103Right-handed alpha
Helix 50
AF5
F
112 136Right-handed alpha
Helix 51
AF6
F
137 154Right-handed alpha
Helix 52
AF7
F
170 178Right-handed alpha
Helix 53
AF8
F
182 190Right-handed alpha
Helix 54
AF9
F
211 218Right-handed alpha
Helix 55
AG1
F
218 223Right-handed alpha
Helix 56
AG2
F
223 228Right-handed alpha
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There are 19 sheets in PDB entry 5X6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
20 23first strand
Strand 2
M
91 98anti-parallel
Strand 3
M
37 43anti-parallel
Strand 4
M
67 70anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
27 29first strand
Strand 2
M
84 87anti-parallel
Strand 3
M
45 51anti-parallel
Strand 4
M
57 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
155 158first strand
Strand 2
M
161 164anti-parallel
Strand 3
M
205 208anti-parallel
Strand 4
M
201 202anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
20 21first strand
Strand 2
N
93 98anti-parallel
Strand 3
N
37 43anti-parallel
Strand 4
N
67 70anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
57 64first strand
Strand 2
N
45 51anti-parallel
Strand 3
N
84 87anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
155 156first strand
Strand 2
N
163 164anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
199 200first strand
Strand 2
N
207 208anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
67 70first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
93 98anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
57 64first strand
Strand 2
A
45 51anti-parallel
Strand 3
A
84 87anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
157 158first strand
Strand 2
A
161 162anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
67 70first strand
Strand 2
B
37 41anti-parallel
Strand 3
B
94 98anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
57 64first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
84 87anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
155 158first strand
Strand 2
B
161 164anti-parallel
Strand 3
B
207 208anti-parallel
Strand 4
B
199 200anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
20 23first strand
Strand 2
E
91 98anti-parallel
Strand 3
E
37 43anti-parallel
Strand 4
E
67 70anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
58 64first strand
Strand 2
E
45 50anti-parallel
Strand 3
E
84 87anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
155 158first strand
Strand 2
E
161 164anti-parallel
Strand 3
E
206 208anti-parallel
Strand 4
E
199 201anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
19 21first strand
Strand 2
F
84 98anti-parallel
Strand 3
F
37 51anti-parallel
Strand 4
F
57 64anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
19 21first strand
Strand 2
F
84 98anti-parallel
Strand 3
F
37 51anti-parallel
Strand 4
F
67 70anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
199 202first strand
Strand 2
F
205 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il