Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X8Q entry

There are 8 chains in PDB entry 5X8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 266VAL 493
B
 THR 2345GLY 2359
C
 SER 266VAL 493
D
 ASN 2346GLY 2359
E
 SER 266VAL 493
F
 ASN 2346GLY 2359
G
 SER 266VAL 493
H
 THR 2345GLY 2359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5X8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
266 285Right-handed alpha
Helix 2
AA2
A
288 295Right-handed alpha
Helix 3
AA3
A
301 310Right-handed alpha
Helix 4
AA4
A
312 338Right-handed alpha
Helix 5
AA5
A
345 366Right-handed alpha
Helix 6
AA6
A
384 392Right-handed 310
Helix 7
AA7
A
393 410Right-handed alpha
Helix 8
AA8
A
413 426Right-handed alpha
Helix 9
AA9
A
435 458Right-handed alpha
Helix 10
AB1
A
459 466Right-handed 310
Helix 11
AB2
A
469 486Right-handed alpha
Helix 12
AB3
A
487 490Right-handed 310
Helix 13
AB4
B
2346 2358Right-handed alpha
Helix 14
AB5
C
267 285Right-handed alpha
Helix 15
AB6
C
288 295Right-handed alpha
Helix 16
AB7
C
296 298Right-handed 310
Helix 17
AB8
C
301 310Right-handed alpha
Helix 18
AB9
C
312 338Right-handed alpha
Helix 19
AC1
C
345 365Right-handed alpha
Helix 20
AC2
C
384 392Right-handed 310
Helix 21
AC3
C
393 410Right-handed alpha
Helix 22
AC4
C
413 426Right-handed alpha
Helix 23
AC5
C
435 457Right-handed alpha
Helix 24
AC6
C
461 466Right-handed 310
Helix 25
AC7
C
469 486Right-handed alpha
Helix 26
AC8
C
487 490Right-handed 310
Helix 27
AC9
D
2347 2358Right-handed alpha
Helix 28
AD1
E
267 285Right-handed alpha
Helix 29
AD2
E
288 295Right-handed alpha
Helix 30
AD3
E
301 310Right-handed alpha
Helix 31
AD4
E
312 338Right-handed alpha
Helix 32
AD5
E
340 344Right-handed 310
Helix 33
AD6
E
345 365Right-handed alpha
Helix 34
AD7
E
384 392Right-handed 310
Helix 35
AD8
E
393 410Right-handed alpha
Helix 36
AD9
E
413 426Right-handed alpha
Helix 37
AE1
E
435 457Right-handed alpha
Helix 38
AE2
E
469 487Right-handed alpha
Helix 39
AE3
E
488 490Right-handed 310
Helix 40
AE4
F
2347 2358Right-handed alpha
Helix 41
AE5
G
267 285Right-handed alpha
Helix 42
AE6
G
288 295Right-handed alpha
Helix 43
AE7
G
296 298Right-handed 310
Helix 44
AE8
G
301 311Right-handed alpha
Helix 45
AE9
G
312 337Right-handed alpha
Helix 46
AF1
G
345 366Right-handed alpha
Helix 47
AF2
G
384 392Right-handed 310
Helix 48
AF3
G
393 409Right-handed alpha
Helix 49
AF4
G
413 426Right-handed alpha
Helix 50
AF5
G
435 458Right-handed alpha
Helix 51
AF6
G
459 466Right-handed 310
Helix 52
AF7
G
469 486Right-handed alpha
Helix 53
AF8
G
487 490Right-handed 310
Helix 54
AF9
H
2346 2358Right-handed alpha
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There are 4 sheets in PDB entry 5X8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
375 378anti-parallel
Strand 3
A
381 383anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 370first strand
Strand 2
C
375 378anti-parallel
Strand 3
C
381 383anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
369 370first strand
Strand 2
E
375 378anti-parallel
Strand 3
E
381 383anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
369 370first strand
Strand 2
G
375 378anti-parallel
Strand 3
G
381 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il