Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5X8X entry

There are 8 chains in PDB entry 5X8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 266VAL 493
B
 ASN 2347MET 2359
C
 SER 266VAL 493
D
 THR 2346GLY 2360
E
 SER 266VAL 493
F
 THR 2346MET 2359
G
 LEU 267HIS 490
H
 THR 2346GLY 2360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5X8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
266 284Right-handed alpha
Helix 2
AA2
A
288 295Right-handed alpha
Helix 3
AA3
A
296 298Right-handed 310
Helix 4
AA4
A
301 311Right-handed alpha
Helix 5
AA5
A
312 338Right-handed alpha
Helix 6
AA6
A
345 366Right-handed alpha
Helix 7
AA7
A
384 392Right-handed 310
Helix 8
AA8
A
393 410Right-handed alpha
Helix 9
AA9
A
413 426Right-handed alpha
Helix 10
AB1
A
435 457Right-handed alpha
Helix 11
AB2
A
461 466Right-handed alpha
Helix 12
AB3
A
469 486Right-handed alpha
Helix 13
AB4
A
487 490Right-handed 310
Helix 14
AB5
B
2348 2359Right-handed alpha
Helix 15
AB6
C
267 284Right-handed alpha
Helix 16
AB7
C
288 295Right-handed alpha
Helix 17
AB8
C
296 298Right-handed 310
Helix 18
AB9
C
301 311Right-handed alpha
Helix 19
AC1
C
312 338Right-handed alpha
Helix 20
AC2
C
345 366Right-handed alpha
Helix 21
AC3
C
384 392Right-handed 310
Helix 22
AC4
C
393 410Right-handed alpha
Helix 23
AC5
C
413 426Right-handed alpha
Helix 24
AC6
C
435 457Right-handed alpha
Helix 25
AC7
C
461 466Right-handed alpha
Helix 26
AC8
C
469 486Right-handed alpha
Helix 27
AC9
C
487 490Right-handed 310
Helix 28
AD1
D
2347 2360Right-handed alpha
Helix 29
AD2
E
267 284Right-handed alpha
Helix 30
AD3
E
288 295Right-handed alpha
Helix 31
AD4
E
296 298Right-handed 310
Helix 32
AD5
E
301 311Right-handed alpha
Helix 33
AD6
E
312 338Right-handed alpha
Helix 34
AD7
E
345 366Right-handed alpha
Helix 35
AD8
E
384 392Right-handed 310
Helix 36
AD9
E
393 410Right-handed alpha
Helix 37
AE1
E
413 426Right-handed alpha
Helix 38
AE2
E
435 457Right-handed alpha
Helix 39
AE3
E
461 466Right-handed alpha
Helix 40
AE4
E
469 486Right-handed alpha
Helix 41
AE5
E
487 490Right-handed 310
Helix 42
AE6
F
2347 2359Right-handed alpha
Helix 43
AE7
G
268 284Right-handed alpha
Helix 44
AE8
G
288 295Right-handed alpha
Helix 45
AE9
G
296 298Right-handed 310
Helix 46
AF1
G
301 311Right-handed alpha
Helix 47
AF2
G
312 338Right-handed alpha
Helix 48
AF3
G
345 366Right-handed alpha
Helix 49
AF4
G
384 392Right-handed 310
Helix 50
AF5
G
393 410Right-handed alpha
Helix 51
AF6
G
413 426Right-handed alpha
Helix 52
AF7
G
435 457Right-handed alpha
Helix 53
AF8
G
461 466Right-handed alpha
Helix 54
AF9
G
469 486Right-handed alpha
Helix 55
AG1
G
487 490Right-handed 310
Helix 56
AG2
H
2347 2360Right-handed alpha
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There are 4 sheets in PDB entry 5X8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
375 378anti-parallel
Strand 3
A
381 383anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 370first strand
Strand 2
C
375 378anti-parallel
Strand 3
C
381 383anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
369 370first strand
Strand 2
E
375 378anti-parallel
Strand 3
E
381 383anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
369 370first strand
Strand 2
G
375 378anti-parallel
Strand 3
G
381 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il