Analysis of interatomic Contacts of Structural Units in PDB entry:
5XBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XBL entry

There are 3 chains in PDB entry 5XBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
D
 MET 1LEU 82
B
 U 11 U 98
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 5XBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 91Right-handed alpha
Helix 2
AA2
A
97 102Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
A
180 196Right-handed alpha
Helix 8
AA8
A
208 213Right-handed alpha
Helix 9
AA9
A
217 228Right-handed alpha
Helix 10
AB1
A
236 246Right-handed alpha
Helix 11
AB2
A
252 257Right-handed alpha
Helix 12
AB3
A
270 275Right-handed alpha
Helix 13
AB4
A
275 283Right-handed alpha
Helix 14
AB5
A
286 306Right-handed alpha
Helix 15
AB6
A
315 340Right-handed alpha
Helix 16
AB7
A
346 352Right-handed alpha
Helix 17
AB8
A
358 364Right-handed alpha
Helix 18
AB9
A
368 382Right-handed alpha
Helix 19
AC1
A
389 395Right-handed alpha
Helix 20
AC2
A
404 410Right-handed 310
Helix 21
AC3
A
411 428Right-handed alpha
Helix 22
AC4
A
430 436Right-handed alpha
Helix 23
AC5
A
436 446Right-handed alpha
Helix 24
AC6
A
477 482Right-handed alpha
Helix 25
AC7
A
483 496Right-handed alpha
Helix 26
AC8
A
512 525Right-handed alpha
Helix 27
AC9
A
544 552Right-handed alpha
Helix 28
AD1
A
560 568Right-handed alpha
Helix 29
AD2
A
591 602Right-handed alpha
Helix 30
AD3
A
603 609Right-handed alpha
Helix 31
AD4
A
612 626Right-handed alpha
Helix 32
AD5
A
628 637Right-handed alpha
Helix 33
AD6
A
638 640Right-handed 310
Helix 34
AD7
A
644 646Right-handed 310
Helix 35
AD8
A
647 653Right-handed alpha
Helix 36
AD9
A
664 668Right-handed alpha
Helix 37
AE1
A
678 685Right-handed alpha
Helix 38
AE2
A
706 710Right-handed 310
Helix 39
AE3
A
719 724Right-handed alpha
Helix 40
AE4
A
730 751Right-handed alpha
Helix 41
AE5
A
775 792Right-handed alpha
Helix 42
AE6
A
794 799Right-handed alpha
Helix 43
AE7
A
802 807Right-handed 310
Helix 44
AE8
A
808 817Right-handed alpha
Helix 45
AE9
A
851 853Right-handed 310
Helix 46
AF1
A
860 865Right-handed 310
Helix 47
AF2
A
872 889Right-handed alpha
Helix 48
AF3
A
893 901Right-handed alpha
Helix 49
AF4
A
902 906Right-handed 310
Helix 50
AF5
A
909 922Right-handed alpha
Helix 51
AF6
A
925 940Right-handed alpha
Helix 52
AF7
A
959 971Right-handed alpha
Helix 53
AF8
A
981 1001Right-handed alpha
Helix 54
AF9
A
1002 1008Right-handed 310
Helix 55
AG1
A
1041 1045Right-handed 310
Helix 56
AG2
A
1078 1087Right-handed alpha
Helix 57
AG3
A
1168 1175Right-handed alpha
Helix 58
AG4
A
1177 1183Right-handed alpha
Helix 59
AG5
A
1229 1241Right-handed alpha
Helix 60
AG6
A
1248 1261Right-handed alpha
Helix 61
AG7
A
1263 1278Right-handed alpha
Helix 62
AG8
A
1283 1297Right-handed alpha
Helix 63
AG9
A
1301 1310Right-handed alpha
Helix 64
AH1
A
1312 1317Right-handed alpha
Helix 65
AH2
A
1340 1344Right-handed 310
Helix 66
AH3
A
1363 1365Right-handed 310
Helix 67
AH4
D
2 12Right-handed alpha
Helix 68
AH5
D
50 60Right-handed alpha
Helix 69
AH6
D
71 79Right-handed alpha
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There are 11 sheets in PDB entry 5XBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 762parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1216anti-parallel
Strand 7
A
1219 1222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
659 663anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
838 840first strand
Strand 2
A
855 857anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1064first strand
Strand 2
A
1074 1075anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1106 1107first strand
Strand 2
A
1135 1137anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1187 1188anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
29 33anti-parallel
Strand 3
D
40 44anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il