Analysis of interatomic Contacts of Structural Units in PDB entry:
5XDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XDF entry

There are 2 chains in PDB entry 5XDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 326
B
 MET 1VAL 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5XDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
25 31Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
77 90Right-handed alpha
Helix 5
AA5
A
98 105Right-handed alpha
Helix 6
AA6
A
105 115Right-handed alpha
Helix 7
AA7
A
120 124Right-handed 310
Helix 8
AA8
A
130 138Right-handed alpha
Helix 9
AA9
A
150 162Right-handed alpha
Helix 10
AB1
A
165 176Right-handed alpha
Helix 11
AB2
A
183 188Right-handed alpha
Helix 12
AB3
A
189 204Right-handed alpha
Helix 13
AB4
A
209 213Right-handed 310
Helix 14
AB5
A
222 232Right-handed alpha
Helix 15
AB6
A
262 267Right-handed alpha
Helix 16
AB7
A
290 307Right-handed alpha
Helix 17
AB8
B
12 25Right-handed alpha
Helix 18
AB9
B
25 31Right-handed alpha
Helix 19
AC1
B
53 55Right-handed 310
Helix 20
AC2
B
77 90Right-handed alpha
Helix 21
AC3
B
98 105Right-handed alpha
Helix 22
AC4
B
105 115Right-handed alpha
Helix 23
AC5
B
120 124Right-handed 310
Helix 24
AC6
B
130 138Right-handed alpha
Helix 25
AC7
B
150 162Right-handed alpha
Helix 26
AC8
B
165 176Right-handed alpha
Helix 27
AC9
B
183 188Right-handed alpha
Helix 28
AD1
B
189 204Right-handed alpha
Helix 29
AD2
B
209 213Right-handed 310
Helix 30
AD3
B
222 232Right-handed alpha
Helix 31
AD4
B
262 267Right-handed alpha
Helix 32
AD5
B
290 308Right-handed alpha
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There are 3 sheets in PDB entry 5XDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
34 42parallel
Strand 3
A
2 9parallel
Strand 4
A
69 72parallel
Strand 5
A
94 96parallel
Strand 6
A
118 119parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
248 259parallel
Strand 3
A
234 245anti-parallel
Strand 4
A
141 148anti-parallel
Strand 5
A
270 277anti-parallel
Strand 6
A
280 286anti-parallel
Strand 7
B
280 286anti-parallel
Strand 8
B
270 277anti-parallel
Strand 9
B
141 148anti-parallel
Strand 10
B
234 245anti-parallel
Strand 11
B
248 259anti-parallel
Strand 12
B
214 215parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
34 42parallel
Strand 3
B
2 9parallel
Strand 4
B
69 72parallel
Strand 5
B
94 96parallel
Strand 6
B
118 119parallel
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