Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZKP entry

There is 1 chain in PDB entry 5ZKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ARG 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5ZKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 44Right-handed alpha
Helix 2
AA2
A
46 48Right-handed 310
Helix 3
AA3
A
49 68Right-handed alpha
Helix 4
AA4
A
69 79Right-handed alpha
Helix 5
AA5
A
86 120Right-handed alpha
Helix 6
AA6
A
141 155Right-handed alpha
Helix 7
AA7
A
183 215Right-handed alpha
Helix 8
AA8
A
1012 1028Right-handed alpha
Helix 9
AA9
A
1070 1076Right-handed alpha
Helix 10
AB1
A
1101 1113Right-handed alpha
Helix 11
AB2
A
1129 1131Right-handed 310
Helix 12
AB3
A
1132 244Right-handed alpha
Helix 13
AB4
A
244 261Right-handed alpha
Helix 14
AB5
A
264 283Right-handed alpha
Helix 15
AB6
A
284 313Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5ZKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
169 173anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1036first strand
Strand 2
A
1002 1008parallel
Strand 3
A
1051 1056parallel
Strand 4
A
1086 1093parallel
Strand 5
A
1117 1118parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1036first strand
Strand 2
A
1002 1008parallel
Strand 3
A
1051 1056parallel
Strand 4
A
1086 1093parallel
Strand 5
A
1123 1126parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1058 1059first strand
Strand 2
A
1065 1066anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il