Analysis of interatomic Contacts of Structural Units in PDB entry:
6ABP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ABP entry

There is 1 chain in PDB entry 6ABP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LYS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6ABP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H01
A
16 30Right-handed alpha
Helix 2
H02
A
42 57Right-handed alpha
Helix 3
H03
A
70 81Right-handed alpha
Helix 4
H04
A
109 129Right-handed alpha
Helix 5
H05
A
146 161Right-handed alpha
Helix 6
H06
A
177 192Right-handed alpha
Helix 7
H07
A
206 218Right-handed alpha
Helix 8
H08
A
233 241Right-handed alpha
Helix 9
H09
A
257 273Right-handed alpha
Helix 10
H10
A
293 301Right-handed alpha
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There are 2 sheets in PDB entry 6ABP. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
4 10parallel
Strand 3
A
59 64parallel
Strand 4
A
84 89parallel
Strand 5
A
104 109parallel
Strand 6
A
281 283parallel
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There are 6 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
136 141parallel
Strand 3
A
199 204parallel
Strand 4
A
225 232parallel
Strand 5
A
247 253parallel
Strand 6
A
287 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il