Analysis of interatomic Contacts of Structural Units in PDB entry:
6BOB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BOB entry

There are 4 chains in PDB entry 6BOB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 27	ASP 637
B	GLU 27	ASP 637
C	GLU 27	ASP 637
D	GLU 27	ASP 637

There are112 helices in PDB entry 6BOB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	43	Right-handed alpha
Helix 2	AA2	A	48	56	Right-handed alpha
Helix 3	AA3	A	57	64	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	119	127	Right-handed alpha
Helix 7	AA7	A	129	140	Right-handed alpha
Helix 8	AA8	A	165	171	Right-handed alpha
Helix 9	AA9	A	175	185	Right-handed alpha
Helix 10	AB1	A	198	205	Right-handed alpha
Helix 11	AB2	A	211	222	Right-handed alpha
Helix 12	AB3	A	241	250	Right-handed alpha
Helix 13	AB4	A	251	260	Right-handed alpha
Helix 14	AB5	A	290	296	Right-handed alpha
Helix 15	AB6	A	301	308	Right-handed 310
Helix 16	AB7	A	309	324	Right-handed alpha
Helix 17	AB8	A	324	348	Right-handed alpha
Helix 18	AB9	A	381	407	Right-handed alpha
Helix 19	AC1	A	408	410	Right-handed 310
Helix 20	AC2	A	424	442	Right-handed alpha
Helix 21	AC3	A	449	463	Right-handed alpha
Helix 22	AC4	A	464	469	Right-handed 310
Helix 23	AC5	A	474	486	Right-handed alpha
Helix 24	AC6	A	489	511	Right-handed alpha
Helix 25	AC7	A	512	514	Right-handed 310
Helix 26	AC8	A	524	537	Right-handed alpha
Helix 27	AC9	A	551	579	Right-handed alpha
Helix 28	AD1	A	588	607	Right-handed alpha
Helix 29	AD2	B	29	43	Right-handed alpha
Helix 30	AD3	B	48	56	Right-handed alpha
Helix 31	AD4	B	57	64	Right-handed alpha
Helix 32	AD5	B	81	89	Right-handed alpha
Helix 33	AD6	B	91	102	Right-handed alpha
Helix 34	AD7	B	119	127	Right-handed alpha
Helix 35	AD8	B	129	140	Right-handed alpha
Helix 36	AD9	B	165	171	Right-handed alpha
Helix 37	AE1	B	175	185	Right-handed alpha
Helix 38	AE2	B	198	205	Right-handed alpha
Helix 39	AE3	B	211	222	Right-handed alpha
Helix 40	AE4	B	241	250	Right-handed alpha
Helix 41	AE5	B	251	260	Right-handed alpha
Helix 42	AE6	B	290	296	Right-handed alpha
Helix 43	AE7	B	301	308	Right-handed 310
Helix 44	AE8	B	309	324	Right-handed alpha
Helix 45	AE9	B	324	348	Right-handed alpha
Helix 46	AF1	B	381	407	Right-handed alpha
Helix 47	AF2	B	408	410	Right-handed 310
Helix 48	AF3	B	424	442	Right-handed alpha
Helix 49	AF4	B	449	463	Right-handed alpha
Helix 50	AF5	B	464	469	Right-handed 310
Helix 51	AF6	B	474	486	Right-handed alpha
Helix 52	AF7	B	489	511	Right-handed alpha
Helix 53	AF8	B	512	514	Right-handed 310
Helix 54	AF9	B	524	537	Right-handed alpha
Helix 55	AG1	B	551	579	Right-handed alpha
Helix 56	AG2	B	588	607	Right-handed alpha
Helix 57	AG3	C	29	43	Right-handed alpha
Helix 58	AG4	C	48	56	Right-handed alpha
Helix 59	AG5	C	57	64	Right-handed alpha
Helix 60	AG6	C	81	89	Right-handed alpha
Helix 61	AG7	C	91	102	Right-handed alpha
Helix 62	AG8	C	119	127	Right-handed alpha
Helix 63	AG9	C	129	140	Right-handed alpha
Helix 64	AH1	C	165	171	Right-handed alpha
Helix 65	AH2	C	175	185	Right-handed alpha
Helix 66	AH3	C	198	205	Right-handed alpha
Helix 67	AH4	C	211	222	Right-handed alpha
Helix 68	AH5	C	241	250	Right-handed alpha
Helix 69	AH6	C	251	260	Right-handed alpha
Helix 70	AH7	C	290	296	Right-handed alpha
Helix 71	AH8	C	301	308	Right-handed 310
Helix 72	AH9	C	309	324	Right-handed alpha
Helix 73	AI1	C	324	348	Right-handed alpha
Helix 74	AI2	C	381	407	Right-handed alpha
Helix 75	AI3	C	408	410	Right-handed 310
Helix 76	AI4	C	424	442	Right-handed alpha
Helix 77	AI5	C	449	463	Right-handed alpha
Helix 78	AI6	C	464	469	Right-handed 310
Helix 79	AI7	C	474	486	Right-handed alpha
Helix 80	AI8	C	489	511	Right-handed alpha
Helix 81	AI9	C	512	514	Right-handed 310
Helix 82	AJ1	C	524	537	Right-handed alpha
Helix 83	AJ2	C	551	579	Right-handed alpha
Helix 84	AJ3	C	588	607	Right-handed alpha
Helix 85	AJ4	D	29	43	Right-handed alpha
Helix 86	AJ5	D	48	56	Right-handed alpha
Helix 87	AJ6	D	57	64	Right-handed alpha
Helix 88	AJ7	D	81	89	Right-handed alpha
Helix 89	AJ8	D	91	102	Right-handed alpha
Helix 90	AJ9	D	119	127	Right-handed alpha
Helix 91	AK1	D	129	140	Right-handed alpha
Helix 92	AK2	D	165	171	Right-handed alpha
Helix 93	AK3	D	175	185	Right-handed alpha
Helix 94	AK4	D	198	205	Right-handed alpha
Helix 95	AK5	D	211	222	Right-handed alpha
Helix 96	AK6	D	241	250	Right-handed alpha
Helix 97	AK7	D	251	260	Right-handed alpha
Helix 98	AK8	D	290	296	Right-handed alpha
Helix 99	AK9	D	301	308	Right-handed 310
Helix 100	AL1	D	309	324	Right-handed alpha
Helix 101	AL2	D	324	348	Right-handed alpha
Helix 102	AL3	D	381	407	Right-handed alpha
Helix 103	AL4	D	408	410	Right-handed 310
Helix 104	AL5	D	424	442	Right-handed alpha
Helix 105	AL6	D	449	463	Right-handed alpha
Helix 106	AL7	D	464	469	Right-handed 310
Helix 107	AL8	D	474	486	Right-handed alpha
Helix 108	AL9	D	489	511	Right-handed alpha
Helix 109	AM1	D	512	514	Right-handed 310
Helix 110	AM2	D	524	537	Right-handed alpha
Helix 111	AM3	D	551	579	Right-handed alpha
Helix 112	AM4	D	588	607	Right-handed alpha

There are 4 sheets in PDB entry 6BOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	269	first strand
Strand 2	A	272	277	anti-parallel
Strand 3	A	630	634	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	269	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	630	634	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	269	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	630	634	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	269	first strand
Strand 2	D	272	277	anti-parallel
Strand 3	D	630	634	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BOB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BOB