Analysis of interatomic Contacts of Structural Units in PDB entry:
7JDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JDW entry

There is 1 chain in PDB entry 7JDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 64ASP 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7JDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 98Right-handed alpha
Helix 2
2
A
101 110Right-handed alpha
Helix 3
3
A
117 136Right-handed alpha
Helix 4
4
A
168 171Right-handed alpha
Helix 5
5
A
187 189Right-handed 310
Helix 6
6
A
192 195Right-handed 310
Helix 7
7
A
197 205Right-handed alpha
Helix 8
8
A
220 222Right-handed 310
Helix 9
9
A
232 241Right-handed alpha
Helix 10
10
A
255 257Right-handed 310
Helix 11
11
A
275 285Right-handed alpha
Helix 12
12
A
327 332Right-handed alpha
Helix 13
13
A
356 360Right-handed 310
Helix 14
14
A
377 385Right-handed alpha
Helix 15
15
A
398 401Right-handed 310
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There are 7 sheets in PDB entry 7JDW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
77 80parallel
Strand 3
A
409 411anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
159 161anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
178 181anti-parallel
Strand 3
A
209 212parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
264 267anti-parallel
Strand 3
A
290 293parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
315 318parallel
Strand 3
A
308 312anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 393first strand
Strand 2
A
369 373parallel
Strand 3
A
363 366anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
413 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il