Analysis of interatomic Contacts of Structural Units in PDB entry:
9CGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CGT entry

There is 1 chain in PDB entry 9CGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1GLN 684
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9CGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 24Right-handed 310
Helix 2
2
A
30 32Right-handed 310
Helix 3
3
A
36 38Right-handed 310
Helix 4
4
A
54 62Right-handed alpha
Helix 5
5
A
65 69Right-handed alpha
Helix 6
6
A
115 128Right-handed alpha
Helix 7
7
A
186 191Right-handed alpha
Helix 8
8
A
205 220Right-handed alpha
Helix 9
9
A
231 233Right-handed 310
Helix 10
10
A
236 249Right-handed alpha
Helix 11
11
A
267 275Right-handed alpha
Helix 12
12
A
283 293Right-handed alpha
Helix 13
13
A
300 313Right-handed alpha
Helix 14
14
A
317 319Right-handed 310
Helix 15
15
A
339 351Right-handed alpha
Helix 16
16
A
362 364Right-handed 310
Helix 17
17
A
373 375Right-handed 310
Helix 18
18
A
386 400Right-handed alpha
Helix 19
19
A
402 406Right-handed alpha
Helix 20
20
A
537 539Right-handed 310
Helix 21
21
A
609 611Right-handed 310
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There are 12 sheets in PDB entry 9CGT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
16 20parallel
Strand 3
A
73 76parallel
Strand 4
A
131 136parallel
Strand 5
A
225 228parallel
Strand 6
A
253 256parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
92 94anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 491first strand
Strand 2
A
428 435anti-parallel
Strand 3
A
418 425anti-parallel
Strand 4
A
408 414anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
479 481anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
469 471anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
577 580parallel
Strand 3
A
558 560anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 551first strand
Strand 2
A
513 519anti-parallel
Strand 3
A
499 504anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
527 530anti-parallel
Strand 3
A
533 535anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 642first strand
Strand 2
A
584 592anti-parallel
Strand 3
A
676 682parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 606first strand
Strand 2
A
646 654anti-parallel
Strand 3
A
667 670anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 654first strand
Strand 2
A
659 661anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
162 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il