Analysis of interatomic Contacts of Structural Units in PDB entry:
9GAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9GAF entry

There are 2 chains in PDB entry 9GAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 295
C
 THR 301LYS 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9GAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 27Right-handed 310
Helix 2
2
A
31 44Right-handed alpha
Helix 3
3
A
52 54Right-handed 310
Helix 4
4
A
88 98Right-handed alpha
Helix 5
5
A
106 116Right-handed alpha
Helix 6
6
A
126 135Right-handed alpha
Helix 7
7
A
206 212Right-handed alpha
Helix 8
8
A
214 223Right-handed alpha
Helix 9
9
A
228 245Right-handed alpha
Helix 10
10
A
250 252Right-handed 310
Helix 11
11
C
312 327Right-handed 310
Helix 12
12
C
331 343Right-handed alpha
Helix 13
13
C
388 398Right-handed alpha
Helix 14
14
C
406 416Right-handed alpha
Helix 15
15
C
426 436Right-handed alpha
Helix 16
16
C
506 512Right-handed alpha
Helix 17
17
C
514 523Right-handed alpha
Helix 18
18
C
528 545Right-handed alpha
Helix 19
19
C
550 552Right-handed 310
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There are 4 sheets in PDB entry 9GAF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 288first strand
Strand 2
A
277 281anti-parallel
Strand 3
A
6 10anti-parallel
Strand 4
A
153 158anti-parallel
Strand 5
A
164 170anti-parallel
Strand 6
A
66 70anti-parallel
Strand 7
A
76 80anti-parallel
Strand 8
A
103 105parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
198 204anti-parallel
Strand 3
A
255 261anti-parallel
Strand 4
A
266 270anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
584 589first strand
Strand 2
C
576 581anti-parallel
Strand 3
C
306 310anti-parallel
Strand 4
C
453 458anti-parallel
Strand 5
C
464 470anti-parallel
Strand 6
C
366 370anti-parallel
Strand 7
C
376 379anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
491 494first strand
Strand 2
C
498 504anti-parallel
Strand 3
C
555 561anti-parallel
Strand 4
C
566 570anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il