Analysis of Ligand-Protein Contacts in PDB entry:
1RDQ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 8 ligands in PDB entry 1RDQ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
E
197 11PHOSPHOTHREONINE
lig 2
SEP
E
338 10PHOSPHOSERINE
lig 3
PO4
E
598 5PHOSPHATE ION
lig 4
MG
E
601 1MAGNESIUM ION
lig 5
MG
E
602 1MAGNESIUM ION
lig 6
ADP
E
599 27ADENOSINE-5'-DIPHOSPHATE
lig 7
MRD
E
800 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 8
GOL
E
700 6GLYCEROL