Analysis of Ligand-Protein Contacts in PDB entry:
1GMK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 65 ligands in PDB entry 1GMK. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
FVA
A
1 9N-FORMYL-L-VALINE
lig 2
DLE
A
4 8D-LEUCINE
lig 3
DVA
A
6 7D-VALINE
lig 4
DVA
A
8 7D-VALINE
lig 5
DLE
A
10 8D-LEUCINE
lig 6
DLE
A
12 8D-LEUCINE
lig 7
DLE
A
14 8D-LEUCINE
lig 8
ETA
A
16 4ETHANOLAMINE
lig 9
FVA
B
1 9N-FORMYL-L-VALINE
lig 10
DLE
B
4 8D-LEUCINE
lig 11
DVA
B
6 7D-VALINE
lig 12
DVA
B
8 7D-VALINE
lig 13
DLE
B
10 8D-LEUCINE
lig 14
DLE
B
12 8D-LEUCINE
lig 15
DLE
B
14 8D-LEUCINE
lig 16
ETA
B
16 4ETHANOLAMINE
lig 17
FVA
C
1 9N-FORMYL-L-VALINE
lig 18
DLE
C
4 8D-LEUCINE
lig 19
DVA
C
6 7D-VALINE
lig 20
DVA
C
8 7D-VALINE
lig 21
DLE
C
10 8D-LEUCINE
lig 22
DLE
C
12 8D-LEUCINE
lig 23
DLE
C
14 8D-LEUCINE
lig 24
ETA
C
16 4ETHANOLAMINE
lig 25
FVA
D
1 9N-FORMYL-L-VALINE
lig 26
DLE
D
4 8D-LEUCINE
lig 27
DVA
D
6 7D-VALINE
lig 28
DVA
D
8 7D-VALINE
lig 29
DLE
D
10 8D-LEUCINE
lig 30
DLE
D
12 8D-LEUCINE
lig 31
DLE
D
14 8D-LEUCINE
lig 32
ETA
D
16 4ETHANOLAMINE
lig 33
K
A
17 1POTASSIUM ION
lig 34
SCN
A
18 3THIOCYANATE ION
lig 35
SCN
A
19 3THIOCYANATE ION
lig 36
MOH
A
20 2METHANOL
lig 37
MOH
A
21 2METHANOL
lig 38
MOH
A
22 2METHANOL
lig 39
MOH
A
23 2METHANOL
lig 40
MOH
A
24 2METHANOL
lig 41
MOH
A
25 2METHANOL
lig 42
K
B
17 1POTASSIUM ION
lig 43
SCN
B
18 3THIOCYANATE ION
lig 44
MOH
B
19 2METHANOL
lig 45
MOH
B
20 2METHANOL
lig 46
MOH
B
21 2METHANOL
lig 47
MOH
B
22 2METHANOL
lig 48
MOH
B
23 2METHANOL
lig 49
K
C
17 1POTASSIUM ION
lig 50
SCN
C
18 3THIOCYANATE ION
lig 51
MOH
C
19 2METHANOL
lig 52
MOH
C
20 2METHANOL
lig 53
MOH
C
21 2METHANOL
lig 54
MOH
C
22 2METHANOL
lig 55
MOH
C
23 2METHANOL
lig 56
MOH
C
24 2METHANOL
lig 57
K
D
17 1POTASSIUM ION
lig 58
MOH
D
18 2METHANOL
lig 59
MOH
D
19 2METHANOL
lig 60
MOH
D
20 2METHANOL
lig 61
MOH
D
21 2METHANOL
lig 62
MOH
D
22 2METHANOL
lig 63
MOH
D
23 2METHANOL
lig 64
MOH
D
24 2METHANOL
lig 65
MOH
D
25 2METHANOL