Analysis of Ligand-Protein Contacts in PDB entry:
1VRN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 28 ligands in PDB entry 1VRN. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
H
1 10N-FORMYLMETHIONINE
lig 2
HEC
C
401 43HEME C
lig 3
HEC
C
402 43HEME C
lig 4
HEC
C
403 43HEME C
lig 5
HEC
C
404 43HEME C
lig 6
SO4
H
802 5SULFATE ION
lig 7
SO4
H
806 5SULFATE ION
lig 8
SO4
H
807 5SULFATE ION
lig 9
LDA
H
701 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 10
LDA
H
703 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 11
BCB
L
402 66BACTERIOCHLOROPHYLL B
lig 12
BCB
L
404 66BACTERIOCHLOROPHYLL B
lig 13
BPB
L
406 65BACTERIOPHEOPHYTIN B
lig 14
UQ7
L
502 48UBIQUINONE-7
lig 15
LDA
L
702 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 16
LDA
L
706 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 17
FE2
M
500 1FE (II) ION
lig 18
SO4
M
801 5SULFATE ION
lig 19
SO4
M
803 5SULFATE ION
lig 20
SO4
M
804 5SULFATE ION
lig 21
SO4
M
805 5SULFATE ION
lig 22
BCB
M
401 66BACTERIOCHLOROPHYLL B
lig 23
BCB
M
403 66BACTERIOCHLOROPHYLL B
lig 24
BPB
M
405 65BACTERIOPHEOPHYTIN B
lig 25
MQ9
M
501 58MENAQUINONE-9
lig 26
NS5
M
600 4015-CIS-1,2-DIHYDRONEUROSPORENE
lig 27
LDA
M
704 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 28
LDA
M
705 16LAURYL DIMETHYLAMINE-N-OXIDE