Analysis of Ligand-Protein Contacts in PDB entry:
2GD4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 24 ligands in PDB entry 2GD4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
D
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
D
5 10ALPHA-D-MANNOPYRANOSE
lig 6
MAN
D
6 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
ZDO
F
1 21 GLUCOPYRANOSIDE
lig 10
IDS
F
2 162-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
lig 11
SUS
F
3 23 GLUCOPYRANOSE
lig 12
BDP
F
4 12BETA-D-GLUCOPYRANURONIC ACID
lig 13
SGN
F
5 192-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-G
lig 14
ZDO
G
1 21 GLUCOPYRANOSIDE
lig 15
IDS
G
2 162-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
lig 16
SUS
G
3 23 GLUCOPYRANOSE
lig 17
BDP
G
4 12BETA-D-GLUCOPYRANURONIC ACID
lig 18
SGN
G
5 192-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-G
lig 19
CA
H
401 1CALCIUM ION
lig 20
NAG
I
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
I
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
CA
B
401 1CALCIUM ION
lig 23
NAG
C
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
C
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE