Analysis of Ligand-Protein Contacts in PDB entry:
2PDA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 14 ligands in PDB entry 2PDA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MG
A
1237 1MAGNESIUM ION
lig 2
CA
A
1238 1CALCIUM ION
lig 3
SF4
A
1233 8IRON/SULFUR CLUSTER
lig 4
SF4
A
1234 8IRON/SULFUR CLUSTER
lig 5
SF4
A
1235 8IRON/SULFUR CLUSTER
lig 6
TPP
A
1236 26THIAMINE DIPHOSPHATE
lig 7
PYR
A
1239 6PYRUVIC ACID
lig 8
MG
B
1244 1MAGNESIUM ION
lig 9
CA
B
1245 1CALCIUM ION
lig 10
SF4
B
1240 8IRON/SULFUR CLUSTER
lig 11
SF4
B
1241 8IRON/SULFUR CLUSTER
lig 12
SF4
B
1242 8IRON/SULFUR CLUSTER
lig 13
TPP
B
1243 26THIAMINE DIPHOSPHATE
lig 14
PYR
B
1246 6PYRUVIC ACID