Analysis of Ligand-Protein Contacts in PDB entry:
2TMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 6 ligands in PDB entry 2TMD. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
SF4
A
801 8IRON/SULFUR CLUSTER
lig 2
FMN
A
802 31FLAVIN MONONUCLEOTIDE
lig 3
ADP
A
803 27ADENOSINE-5'-DIPHOSPHATE
lig 4
SF4
B
801 8IRON/SULFUR CLUSTER
lig 5
FMN
B
802 31FLAVIN MONONUCLEOTIDE
lig 6
ADP
B
803 27ADENOSINE-5'-DIPHOSPHATE