Analysis of Ligand-Protein Contacts in PDB entry:
3AGM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 11 ligands in PDB entry 3AGM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
197 11PHOSPHOTHREONINE
lig 2
SEP
A
338 10PHOSPHOSERINE
lig 3
69P
B
1 156-PIPERAZIN-1-YL-9H-PURINE
lig 4
OCE
B
2 10OCTANEDIOIC ACID
lig 5
DAR
B
3 11D-ARGININE
lig 6
DAR
B
4 11D-ARGININE
lig 7
DAR
B
5 11D-ARGININE
lig 8
DAR
B
6 11D-ARGININE
lig 9
DAR
B
7 11D-ARGININE
lig 10
DAR
B
8 11D-ARGININE
lig 11
NH2
B
9 1AMINO GROUP