Analysis of Ligand-Protein Contacts in PDB entry:
3S5Y


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 35 ligands in PDB entry 3S5Y. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
XYP
C
4 9BETA-D-XYLOPYRANOSE
lig 5
MAN
C
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
C
6 11ALPHA-D-MANNOPYRANOSE
lig 7
FUC
C
7 10ALPHA-L-FUCOPYRANOSE
lig 8
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 11
XYP
D
4 9BETA-D-XYLOPYRANOSE
lig 12
FUC
D
5 10ALPHA-L-FUCOPYRANOSE
lig 13
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
FUC
E
2 10ALPHA-L-FUCOPYRANOSE
lig 15
NAG
E
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 19
XYP
F
4 9BETA-D-XYLOPYRANOSE
lig 20
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 21
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 24
FUC
G
4 10ALPHA-L-FUCOPYRANOSE
lig 25
DGJ
A
801 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 26
2PE
A
813 10NONAETHYLENE GLYCOL
lig 27
NAG
B
639 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
DGJ
B
802 11(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-
lig 29
2PE
B
810 16NONAETHYLENE GLYCOL
lig 30
2PE
B
811 28NONAETHYLENE GLYCOL
lig 31
2PE
B
812 7NONAETHYLENE GLYCOL
lig 32
EDO
B
814 41,2-ETHANEDIOL
lig 33
2PE
B
815 10NONAETHYLENE GLYCOL
lig 34
ACY
B
842 4ACETIC ACID
lig 35
ACY
B
843 4ACETIC ACID