Analysis of Ligand-Protein Contacts in PDB entry:
3D38


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 38 ligands in PDB entry 3D38. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
H
1 10N-FORMYLMETHIONINE
lig 2
SO4
C
808 5SULFATE ION
lig 3
SO4
C
809 5SULFATE ION
lig 4
SO4
C
810 5SULFATE ION
lig 5
SO4
C
811 5SULFATE ION
lig 6
SO4
C
813 5SULFATE ION
lig 7
SO4
C
814 5SULFATE ION
lig 8
SO4
C
815 5SULFATE ION
lig 9
HEC
C
401 43HEME C
lig 10
HEC
C
402 43HEME C
lig 11
HEC
C
403 43HEME C
lig 12
HEC
C
404 43HEME C
lig 13
HTO
C
706 10HEPTANE-1,2,3-TRIOL
lig 14
HTO
C
707 10HEPTANE-1,2,3-TRIOL
lig 15
SO4
H
803 5SULFATE ION
lig 16
SO4
H
806 5SULFATE ION
lig 17
SO4
H
807 5SULFATE ION
lig 18
SO4
H
812 5SULFATE ION
lig 19
LDA
H
701 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 20
LDA
H
703 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 21
HTO
H
705 10HEPTANE-1,2,3-TRIOL
lig 22
BCB
L
400 66BACTERIOCHLOROPHYLL B
lig 23
BCB
L
401 66BACTERIOCHLOROPHYLL B
lig 24
BPB
L
402 65BACTERIOPHEOPHYTIN B
lig 25
UQ1
L
502 18UBIQUINONE-1
lig 26
UQ1
L
503 18UBIQUINONE-1
lig 27
LDA
L
702 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 28
FE2
M
500 1FE (II) ION
lig 29
SO4
M
801 5SULFATE ION
lig 30
SO4
M
802 5SULFATE ION
lig 31
SO4
M
804 5SULFATE ION
lig 32
SO4
M
805 5SULFATE ION
lig 33
MQ9
M
501 58MENAQUINONE-9
lig 34
BCB
M
400 66BACTERIOCHLOROPHYLL B
lig 35
BCB
M
401 66BACTERIOCHLOROPHYLL B
lig 36
BPB
M
402 65BACTERIOPHEOPHYTIN B
lig 37
NS5
M
600 4015-CIS-1,2-DIHYDRONEUROSPORENE
lig 38
LDA
M
704 16LAURYL DIMETHYLAMINE-N-OXIDE