Analysis of Ligand-Protein Contacts in PDB entry:
3I4D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 73 ligands in PDB entry 3I4D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
BCL
L
602 66BACTERIOCHLOROPHYLL A
lig 2
BCL
L
604 66BACTERIOCHLOROPHYLL A
lig 3
BPH
L
402 65BACTERIOPHEOPHYTIN A
lig 4
U10
L
502 63UBIQUINONE-10
lig 5
UQ1
L
503 18UBIQUINONE-1
lig 6
PO4
L
703 5PHOSPHATE ION
lig 7
PO4
L
705 5PHOSPHATE ION
lig 8
PO4
L
706 5PHOSPHATE ION
lig 9
PO4
L
708 5PHOSPHATE ION
lig 10
DIO
L
711 61,4-DIETHYLENE DIOXIDE
lig 11
GOL
L
722 6GLYCEROL
lig 12
GOL
L
723 6GLYCEROL
lig 13
GOL
L
724 6GLYCEROL
lig 14
GOL
L
725 6GLYCEROL
lig 15
GOL
L
727 6GLYCEROL
lig 16
GOL
L
728 6GLYCEROL
lig 17
GOL
L
730 6GLYCEROL
lig 18
GOL
L
731 6GLYCEROL
lig 19
GOL
L
732 6GLYCEROL
lig 20
GOL
L
733 6GLYCEROL
lig 21
GOL
L
734 6GLYCEROL
lig 22
GOL
L
744 6GLYCEROL
lig 23
HT3
L
751 10(2R,3S)-HEPTANE-1,2,3-TRIOL
lig 24
HTO
L
753 10HEPTANE-1,2,3-TRIOL
lig 25
LDA
L
902 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 26
LDA
L
904 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 27
LDA
L
905 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 28
LDA
L
908 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 29
LDA
L
913 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 30
LDA
L
914 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 31
LDA
L
915 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 32
LDA
L
917 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 33
LDA
L
919 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 34
LDA
L
920 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 35
LDA
L
921 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 36
BCL
M
601 66BACTERIOCHLOROPHYLL A
lig 37
BCL
M
603 66BACTERIOCHLOROPHYLL A
lig 38
BPH
M
401 65BACTERIOPHEOPHYTIN A
lig 39
FE
M
500 1FE (III) ION
lig 40
U10
M
501 63UBIQUINONE-10
lig 41
SPO
M
600 42SPHEROIDENE
lig 42
K
M
701 1POTASSIUM ION
lig 43
CL
M
702 1CHLORIDE ION
lig 44
PO4
M
704 5PHOSPHATE ION
lig 45
PO4
M
707 5PHOSPHATE ION
lig 46
GOL
M
726 6GLYCEROL
lig 47
GOL
M
737 6GLYCEROL
lig 48
GOL
M
740 6GLYCEROL
lig 49
GOL
M
741 6GLYCEROL
lig 50
GOL
M
742 6GLYCEROL
lig 51
CDL
M
800 81CARDIOLIPIN
lig 52
LDA
M
903 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 53
LDA
M
907 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 54
LDA
M
911 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 55
LDA
M
912 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 56
LDA
M
916 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 57
LDA
M
918 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 58
K
H
700 1POTASSIUM ION
lig 59
PO4
H
709 5PHOSPHATE ION
lig 60
GOL
H
721 6GLYCEROL
lig 61
GOL
H
729 6GLYCEROL
lig 62
GOL
H
735 6GLYCEROL
lig 63
GOL
H
736 6GLYCEROL
lig 64
GOL
H
738 6GLYCEROL
lig 65
GOL
H
739 6GLYCEROL
lig 66
GOL
H
743 6GLYCEROL
lig 67
GOL
H
745 6GLYCEROL
lig 68
GOL
H
746 6GLYCEROL
lig 69
HTO
H
752 10HEPTANE-1,2,3-TRIOL
lig 70
LDA
H
901 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 71
LDA
H
906 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 72
LDA
H
909 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 73
LDA
H
910 16LAURYL DIMETHYLAMINE-N-OXIDE