Analysis of Ligand-Protein Contacts in PDB entry:
3O0D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 38 ligands in PDB entry 3O0D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
A
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
A
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MPD
A
304 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 4
MPD
A
305 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 5
MPD
A
306 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 6
MRD
A
307 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 7
K
A
308 1POTASSIUM ION
lig 8
NAG
B
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
B
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
MPD
B
304 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 11
MPD
B
305 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 12
MRD
B
306 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 13
K
B
307 1POTASSIUM ION
lig 14
NAG
C
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
C
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
MPD
C
304 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 17
MPD
C
305 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 18
MPD
C
306 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 19
K
C
307 1POTASSIUM ION
lig 20
NAG
D
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
D
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
MPD
D
304 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 23
MRD
D
305 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 24
MPD
D
306 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 25
K
D
307 1POTASSIUM ION
lig 26
NAG
E
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
E
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
MPD
E
304 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 29
MPD
E
305 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 30
K
E
306 1POTASSIUM ION
lig 31
NAG
F
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
F
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
MRD
F
304 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 34
MPD
F
305 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 35
K
F
306 1POTASSIUM ION
lig 36
NAG
G
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
G
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
K
G
304 1POTASSIUM ION