Analysis of Ligand-Protein Contacts in PDB entry:
5GO8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 69 ligands in PDB entry 5GO8. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
DNE
B
1 8D-NORLEUCINE
lig 2
DGN
B
2 9D-GLUTAMINE
lig 3
DIL
B
3 8D-ISOLEUCINE
lig 4
DPN
B
4 11D-PHENYLALANINE
lig 5
DVA
B
5 7D-VALINE
lig 6
DLY
B
6 9D-LYSINE
lig 7
DTH
B
7 7D-THREONINE
lig 8
DLE
B
8 8D-LEUCINE
lig 9
DTH
B
9 7D-THREONINE
lig 10
DLY
B
11 9D-LYSINE
lig 11
DTH
B
12 7D-THREONINE
lig 12
DIL
B
13 8D-ISOLEUCINE
lig 13
DTH
B
14 7D-THREONINE
lig 14
DLE
B
15 8D-LEUCINE
lig 15
DGL
B
16 9D-GLUTAMIC ACID
lig 16
DVA
B
17 7D-VALINE
lig 17
DGL
B
18 9D-GLUTAMIC ACID
lig 18
DPR
B
19 7D-PROLINE
lig 19
DSN
B
20 6D-SERINE
lig 20
DAS
B
21 8D-ASPARTIC ACID
lig 21
DTH
B
22 7D-THREONINE
lig 22
DIL
B
23 8D-ISOLEUCINE
lig 23
DGL
B
24 9D-GLUTAMIC ACID
lig 24
DSG
B
25 8D-ASPARAGINE
lig 25
DVA
B
26 7D-VALINE
lig 26
DLY
B
27 9D-LYSINE
lig 27
DAL
B
28 5D-ALANINE
lig 28
DLY
B
29 9D-LYSINE
lig 29
DIL
B
30 8D-ISOLEUCINE
lig 30
DGN
B
31 9D-GLUTAMINE
lig 31
DAS
B
32 8D-ASPARTIC ACID
lig 32
DLY
B
33 9D-LYSINE
lig 33
DGL
B
34 9D-GLUTAMIC ACID
lig 34
DIL
B
36 8D-ISOLEUCINE
lig 35
DPR
B
37 7D-PROLINE
lig 36
DPR
B
38 7D-PROLINE
lig 37
DAS
B
39 8D-ASPARTIC ACID
lig 38
DGN
B
40 9D-GLUTAMINE
lig 39
DGN
B
41 9D-GLUTAMINE
lig 40
DAR
B
42 11D-ARGININE
lig 41
DLE
B
43 8D-LEUCINE
lig 42
DIL
B
44 8D-ISOLEUCINE
lig 43
DPN
B
45 11D-PHENYLALANINE
lig 44
DAL
B
46 5D-ALANINE
lig 45
DLY
B
48 9D-LYSINE
lig 46
DGN
B
49 9D-GLUTAMINE
lig 47
DLE
B
50 8D-LEUCINE
lig 48
DGL
B
51 9D-GLUTAMIC ACID
lig 49
DAS
B
52 8D-ASPARTIC ACID
lig 50
DAR
B
54 11D-ARGININE
lig 51
DTH
B
55 7D-THREONINE
lig 52
DLE
B
56 8D-LEUCINE
lig 53
DSN
B
57 6D-SERINE
lig 54
DAS
B
58 8D-ASPARTIC ACID
lig 55
DTY
B
59 12D-TYROSINE
lig 56
DSG
B
60 8D-ASPARAGINE
lig 57
DIL
B
61 8D-ISOLEUCINE
lig 58
DGN
B
62 9D-GLUTAMINE
lig 59
DLY
B
63 9D-LYSINE
lig 60
DGL
B
64 9D-GLUTAMIC ACID
lig 61
DSN
B
65 6D-SERINE
lig 62
DTH
B
66 7D-THREONINE
lig 63
DLE
B
67 8D-LEUCINE
lig 64
DHI
B
68 10D-HISTIDINE
lig 65
DLE
B
69 8D-LEUCINE
lig 66
DVA
B
70 7D-VALINE
lig 67
DLE
B
71 8D-LEUCINE
lig 68
DAR
B
72 11D-ARGININE
lig 69
DLE
B
73 8D-LEUCINE