Analysis of Ligand-Protein Contacts in PDB entry:
5MKF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 49 ligands in PDB entry 5MKF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
A
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
A
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
A
1005 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
PX6
A
1006 401,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
lig 13
PLM
A
1007 18PALMITIC ACID
lig 14
PLM
A
1008 18PALMITIC ACID
lig 15
PLM
A
1009 18PALMITIC ACID
lig 16
CHS
A
1010 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 17
CHS
A
1011 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 18
CA
A
1012 1CALCIUM ION
lig 19
CA
A
1013 1CALCIUM ION
lig 20
CA
A
1014 1CALCIUM ION
lig 21
CA
A
1015 1CALCIUM ION
lig 22
NAG
B
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
B
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
B
1005 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
PX6
B
1006 401,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
lig 26
PLM
B
1007 18PALMITIC ACID
lig 27
PLM
B
1008 18PALMITIC ACID
lig 28
PLM
B
1009 18PALMITIC ACID
lig 29
CHS
B
1010 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 30
CHS
B
1011 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 31
CA
B
1012 1CALCIUM ION
lig 32
NAG
C
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
C
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
C
1005 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
PX6
C
1006 401,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
lig 36
PLM
C
1007 18PALMITIC ACID
lig 37
PLM
C
1008 18PALMITIC ACID
lig 38
PLM
C
1009 18PALMITIC ACID
lig 39
CHS
C
1010 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 40
CHS
C
1011 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 41
NAG
D
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
NAG
D
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
NAG
D
1005 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
PX6
D
1006 401,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
lig 45
PLM
D
1007 18PALMITIC ACID
lig 46
PLM
D
1008 18PALMITIC ACID
lig 47
PLM
D
1009 18PALMITIC ACID
lig 48
CHS
D
1010 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 49
CHS
D
1011 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A