Analysis of Ligand-Protein Contacts in PDB entry:
5CGN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 86 ligands in PDB entry 5CGN. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
DIL
A
2 8D-ISOLEUCINE
lig 2
DLY
A
4 5D-LYSINE
lig 3
DPN
A
5 11D-PHENYLALANINE
lig 4
DLE
A
6 8D-LEUCINE
lig 5
DHI
A
7 10D-HISTIDINE
lig 6
DAL
A
8 5D-ALANINE
lig 7
DAL
A
9 5D-ALANINE
lig 8
DLY
A
10 9D-LYSINE
lig 9
DLY
A
11 5D-LYSINE
lig 10
DPN
A
12 11D-PHENYLALANINE
lig 11
DAL
A
13 5D-ALANINE
lig 12
DLY
A
14 5D-LYSINE
lig 13
DAL
A
15 5D-ALANINE
lig 14
DPN
A
16 11D-PHENYLALANINE
lig 15
DVA
A
17 7D-VALINE
lig 16
DAL
A
18 5D-ALANINE
lig 17
DGL
A
19 9D-GLUTAMIC ACID
lig 18
DIL
A
20 8D-ISOLEUCINE
lig 19
MED
A
21 8D-METHIONINE
lig 20
DSG
A
22 8D-ASPARAGINE
lig 21
DIL
B
2 8D-ISOLEUCINE
lig 22
DLY
B
4 5D-LYSINE
lig 23
DPN
B
5 11D-PHENYLALANINE
lig 24
DLE
B
6 8D-LEUCINE
lig 25
DHI
B
7 10D-HISTIDINE
lig 26
DAL
B
8 5D-ALANINE
lig 27
DAL
B
9 5D-ALANINE
lig 28
DLY
B
10 9D-LYSINE
lig 29
DLY
B
11 5D-LYSINE
lig 30
DPN
B
12 11D-PHENYLALANINE
lig 31
DAL
B
13 5D-ALANINE
lig 32
DLY
B
14 6D-LYSINE
lig 33
DAL
B
15 5D-ALANINE
lig 34
DPN
B
16 11D-PHENYLALANINE
lig 35
DVA
B
17 7D-VALINE
lig 36
DAL
B
18 5D-ALANINE
lig 37
DGL
B
19 9D-GLUTAMIC ACID
lig 38
DIL
B
20 8D-ISOLEUCINE
lig 39
MED
B
21 8D-METHIONINE
lig 40
DSG
B
22 8D-ASPARAGINE
lig 41
DIL
C
2 8D-ISOLEUCINE
lig 42
DLY
C
4 5D-LYSINE
lig 43
DPN
C
5 11D-PHENYLALANINE
lig 44
DLE
C
6 8D-LEUCINE
lig 45
DHI
C
7 10D-HISTIDINE
lig 46
DAL
C
8 5D-ALANINE
lig 47
DAL
C
9 5D-ALANINE
lig 48
DLY
C
10 9D-LYSINE
lig 49
DLY
C
11 5D-LYSINE
lig 50
DPN
C
12 11D-PHENYLALANINE
lig 51
DAL
C
13 5D-ALANINE
lig 52
DLY
C
14 9D-LYSINE
lig 53
DAL
C
15 5D-ALANINE
lig 54
DPN
C
16 11D-PHENYLALANINE
lig 55
DVA
C
17 7D-VALINE
lig 56
DAL
C
18 5D-ALANINE
lig 57
DGL
C
19 9D-GLUTAMIC ACID
lig 58
DIL
C
20 8D-ISOLEUCINE
lig 59
MED
C
21 8D-METHIONINE
lig 60
DSG
C
22 8D-ASPARAGINE
lig 61
DIL
D
2 8D-ISOLEUCINE
lig 62
DLY
D
4 5D-LYSINE
lig 63
DPN
D
5 11D-PHENYLALANINE
lig 64
DLE
D
6 8D-LEUCINE
lig 65
DHI
D
7 10D-HISTIDINE
lig 66
DAL
D
8 5D-ALANINE
lig 67
DAL
D
9 5D-ALANINE
lig 68
DLY
D
10 9D-LYSINE
lig 69
DLY
D
11 6D-LYSINE
lig 70
DPN
D
12 11D-PHENYLALANINE
lig 71
DAL
D
13 5D-ALANINE
lig 72
DLY
D
14 6D-LYSINE
lig 73
DAL
D
15 5D-ALANINE
lig 74
DPN
D
16 11D-PHENYLALANINE
lig 75
DVA
D
17 7D-VALINE
lig 76
DAL
D
18 5D-ALANINE
lig 77
DGL
D
19 9D-GLUTAMIC ACID
lig 78
DIL
D
20 8D-ISOLEUCINE
lig 79
MED
D
21 8D-METHIONINE
lig 80
DSG
D
22 8D-ASPARAGINE
lig 81
XCP
E
8 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 82
XCP
F
8 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 83
XCP
G
8 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 84
XCP
H
8 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 85
CL
A
101 1CHLORIDE ION
lig 86
CL
B
101 1CHLORIDE ION