Analysis of Ligand-Protein Contacts in PDB entry:
5MKE


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 42 ligands in PDB entry 5MKE. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
A
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
CHS
A
1005 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 10
CHS
A
1006 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 11
PX6
A
1007 401,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
lig 12
PLM
A
1008 18PALMITIC ACID
lig 13
PLM
A
1009 18PALMITIC ACID
lig 14
PLM
A
1010 18PALMITIC ACID
lig 15
CA
A
1011 1CALCIUM ION
lig 16
CA
A
1012 1CALCIUM ION
lig 17
NAG
B
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
B
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
CHS
B
1005 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 20
CHS
B
1006 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 21
PX6
B
1007 401,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
lig 22
PLM
B
1008 18PALMITIC ACID
lig 23
PLM
B
1009 18PALMITIC ACID
lig 24
PLM
B
1010 18PALMITIC ACID
lig 25
NAG
C
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
C
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
CHS
C
1005 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 28
CHS
C
1006 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 29
PX6
C
1007 401,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
lig 30
PLM
C
1008 18PALMITIC ACID
lig 31
PLM
C
1009 18PALMITIC ACID
lig 32
PLM
C
1010 18PALMITIC ACID
lig 33
NAG
D
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
D
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
D
1003 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
D
1004 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
CHS
D
1005 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 38
CHS
D
1006 154-AMINO-5-CYCLOHEXYL-3-HYDROXY-PENTANOIC A
lig 39
PX6
D
1007 401,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
lig 40
PLM
D
1008 18PALMITIC ACID
lig 41
PLM
D
1009 18PALMITIC ACID
lig 42
PLM
D
1010 18PALMITIC ACID