Analysis of Ligand-Protein Contacts in PDB entry:
5NET


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 26 ligands in PDB entry 5NET. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
C
3 12ALPHA-D-MANNOPYRANOSE
lig 4
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
E
1 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
E
2 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
MAN
F
3 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 13
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
MAN
G
3 12ALPHA-D-MANNOPYRANOSE
lig 16
MAN
G
4 12ALPHA-D-MANNOPYRANOSE
lig 17
MAN
3
301 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
3
302 11ALPHA-D-MANNOPYRANOSE
lig 19
MAN
A
607 11ALPHA-D-MANNOPYRANOSE
lig 20
NAG
A
614 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
CA
A
619 1CALCIUM ION
lig 22
CA
A
620 1CALCIUM ION
lig 23
CA
A
621 1CALCIUM ION
lig 24
CA
A
622 1CALCIUM ION
lig 25
NAG
B
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
B
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE