100D CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING date
authors Ban, C., Ramakrishnan, B., Sundaralingam, M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand SPM enzyme
Primary referenceCrystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing., Ban C, Ramakrishnan B, Sundaralingam M, Nucleic Acids Res 1994 Dec 11;22(24):5466-76. PMID:7816639
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (100d.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 100D
  • CSU: Contacts of Structural Units for 100D
  • Likely Quarternary Molecular Structure file(s) for 100D
  • Structure Factors (13 Kb)
  • Retrieve 100D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 100D from S2C, [Save to disk]
  • Re-refined 100d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 100D in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 100D
  • Ramachandran plot from PDBSum
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  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 100D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [100d_A] [100d] [100d_B]
  • SWISS-PROT database:
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  • Other resources with information on 100D
  • Community annotation for 100D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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