104D Dna-Rna Hybrid date Dec 16, 1994
title Dna Duplexes Flanked By Hybrid Duplexes: The Solution Struct Chimeric Junctions In
authors L.Zhu, M.Salazar, B.R.Reid
compound source
Molecule: Dnarna (5'-R(Cpgpcpg)-D(Ptpaptpapcpgp
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized
methodSolution NMR
Primary referenceDNA duplexes flanked by hybrid duplexes: the solution structure of chimeric junctions in [r(cgcg)d(TATACGCG)]2., Zhu L, Salazar M, Reid BR, Biochemistry 1995 Feb 21;34(7):2372-80. PMID:7857947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (104d.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 104D
  • Retrieve 104D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 104D from S2C, [Save to disk]
    • View 104D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 104D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 104D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [104d_A] [104d] [104d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 104D
  • Community annotation for 104D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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