108D Dna date Jan 31, 1995
title The Solution Structure Of A Dna Complex With The Fluorescent Intercalator Toto Determined By Nmr Spectroscopy
authors H.P.Spielmann, D.E.Wemmer, J.P.Jacobsen
compound source
Molecule: Dna (5'-D(Cpgpcptpapgpcpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized
methodSolution NMR
ligand TOT enzyme
Primary referenceSolution structure of a DNA complex with the fluorescent bis-intercalator TOTO determined by NMR spectroscopy., Spielmann HP, Wemmer DE, Jacobsen JP, Biochemistry 1995 Jul 11;34(27):8542-53. PMID:7612596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk]
  • Biological Unit Coordinates (108d.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 108D
  • CSU: Contacts of Structural Units for 108D
  • Original NMR restraints for 108D from PDB
  • Retrieve 108D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 108D from S2C, [Save to disk]
    • View 108D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 108D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 108D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [108d_B] [108d_A] [108d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 108D
  • Community annotation for 108D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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