115D Dna date Feb 12, 1993
title Ordered Water Structure In An A-Dna Octamer At 1.7 Angstroms Resolution
authors O.Kennard, W.B.T.Cruse, J.Nachman, T.Prange, Z.Shakked, D.Rabinov
compound source
Molecule: Dna (5'-D(Gpgp(Bru)Pap(Bru)Papcpc)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 61
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.084 45.084 41.720 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand BRU enzyme
Primary referenceOrdered water structure in an A-DNA octamer at 1.7 A resolution., Kennard O, Cruse WB, Nachman J, Prange T, Shakked Z, Rabinovich D, J Biomol Struct Dyn 1986 Feb;3(4):623-47. PMID:3271041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (115d.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 115D
  • CSU: Contacts of Structural Units for 115D
  • Likely Quarternary Molecular Structure file(s) for 115D
  • Retrieve 115D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 115D from S2C, [Save to disk]
    • View 115D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 115D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 115D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [115d_A] [115d_B] [115d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 115D
  • Community annotation for 115D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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