133D THE CRYSTAL STRUCTURE OF N4-METHYLCYTOSINE.GUANOSIN BASE-PAIRS IN THE SYNTHETIC HEXANUCLEOTIDE D(CGCGM(4)CG) date
authors Cervi, A.R., Guy, A., Leonard, G.A., Teoule, R., Hunter, W.N.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand C34 enzyme
Primary referenceThe crystal structure of N4-methylcytosine.guanosine base-pairs in the synthetic hexanucleotide d(CGCGm4CG)., Cervi AR, Guy A, Leonard GA, Teoule R, Hunter WN, Nucleic Acids Res 1993 Dec 11;21(24):5623-9. PMID:8284207
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (133d.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 133D
  • CSU: Contacts of Structural Units for 133D
  • Likely Quarternary Molecular Structure file(s) for 133D
  • Structure Factors (13 Kb)
  • Retrieve 133D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 133D from S2C, [Save to disk]
  • Re-refined 133d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 133D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 133D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 133D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [133d_B] [133d] [133d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 133D
  • Community annotation for 133D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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