145D Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) date
authors Schroth, G.P., Kagawa, T.F., Ho, P.Shing.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.25
ligand 5CM, MCY enzyme
Primary referenceStructure and thermodynamics of nonalternating C.G base pairs in Z-DNA: the 1.3-A crystal structure of the asymmetric hexanucleotide d(m5CGGGm5CG).d(m5CGCCm5CG)., Schroth GP, Kagawa TF, Ho PS, Biochemistry 1993 Dec 14;32(49):13381-92. PMID:8257675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (145d.pdb1.gz) 9 Kb
  • Biological Unit Coordinates (145d.pdb2.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 145D
  • CSU: Contacts of Structural Units for 145D
  • Likely Quarternary Molecular Structure file(s) for 145D
  • Structure Factors (47 Kb)
  • Retrieve 145D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 145D from S2C, [Save to disk]
  • Re-refined 145d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 145D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 145D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 145D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [145d_D] [145d_B] [145d_C] [145d] [145d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 145D
  • Community annotation for 145D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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