165D Dna-Rna Hybrid date Mar 21, 1994
title The Structure Of A Mispaired Rna Double Helix At 1.6 Angstro Resolution And Implications For The Prediction Of Rna Secon Structure
authors W.Cruse, P.Saludjian, E.Biala, P.Strazewski, T.Prange, O.Kennard
compound source
Molecule: Dnarna (5'-R(Gpcpupupcpgpgpcp)-D((Bru)
Chain: A, B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.800 19.400 50.140 90.00 109.90 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand BRU, RHD enzyme
Primary referenceStructure of a mispaired RNA double helix at 1.6-A resolution and implications for the prediction of RNA secondary structure., Cruse WB, Saludjian P, Biala E, Strazewski P, Prange T, Kennard O, Proc Natl Acad Sci U S A 1994 May 10;91(10):4160-4. PMID:7514296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (165d.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 165D
  • CSU: Contacts of Structural Units for 165D
  • Likely Quarternary Molecular Structure file(s) for 165D
  • Retrieve 165D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 165D from S2C, [Save to disk]
  • View 165D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 165D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 165D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [165d_B] [165d] [165d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 165D
  • Community annotation for 165D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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