1A02 Transcription Dna date Dec 08, 1997
title Structure Of The Dna Binding Domains Of Nfat, Fos And Jun Bo
authors L.Chen, J.N.M.Glover, P.G.Hogan, A.Rao, S.C.Harrison
compound source
Molecule: Dna (5'- D(Dtpdtpdgpdgpdapdapdapdapdtpdtpdtpdgpdtpdtp Pdtpdapdg)-3');
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Dapdapdcpdtpdapdtpdgpdapdapdapdcpdapdapdap Pdtpdcpdc)-3');
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: Nuclear Factor Of Activated T Cells
Chain: N
Synonym: Nfat
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: T-Lymphocyte
Gene: Nfat1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Plm1

Molecule: Ap-1 Fragment Fos
Chain: F
Fragment: Fos
Synonym: Fos
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Fragment Jun
Chain: J
Fragment: Jun
Synonym: Jun
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.660 85.460 83.370 90.00 112.03 90.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1JNM, 1OWR, 1P7H, 1T2K
Gene
Ontology
ChainFunctionProcessComponent
F


J


N


Primary referenceStructure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA., Chen L, Glover JN, Hogan PG, Rao A, Harrison SC, Nature 1998 Mar 5;392(6671):42-8. PMID:9510247
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1a02.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 1A02
  • Likely Quarternary Molecular Structure file(s) for 1A02
  • Structure Factors (157 Kb)
  • Retrieve 1A02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A02 from S2C, [Save to disk]
  • Re-refined 1a02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A02
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A02, from MSDmotif at EBI
  • Genome occurence of 1A02's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a02f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1a02j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1a02n2, region N:399-576 [Jmol] [rasmolscript] [script source]
        - Domain d1a02n1, region N:577-678 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a02_F] [1a02_J] [1a02_A] [1a02_N] [1a02] [1a02_B]
  • SWISS-PROT database: [P01100] [P05412] [Q13469]
  • Domain organization of [FOS_HUMAN] [JUN_HUMAN] [NFAC2_HUMAN] by SWISSPFAM
  • Domains found in 1A02: [BRLZ] [IPT ] by SMART
  • Other resources with information on 1A02
  • Community annotation for 1A02 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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