1A0Q Catalytic Antibody date Dec 05, 1997
title 29g11 Complexed With Phenyl [1-(1-N-Succinylamino)Pentyl] Ph
authors J.L.Buchbinder, R.C.Stephenson, T.S.Scanlan, R.J.Fletterick
compound source
Molecule: 29g11 Fab (Light Chain)
Chain: L
Fragment: Fab
Other_details: Phenyl [1-(1-N-Succinylamino)Pentyl]Phosphon Hapten;
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: 29g11 Fab (Heavy Chain)
Chain: H
Fragment: Fab
Other_details: Phenyl [1-(1-N-Succinylamino)Pentyl]Phosphon

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.780 82.610 132.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand HEP, ZN enzyme
related structures by homologous chain: 1F4W, 1IGM, 1KB9, 1T66
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceA comparison of the crystallographic structures of two catalytic antibodies with esterase activity., Buchbinder JL, Stephenson RC, Scanlan TS, Fletterick RJ, J Mol Biol 1998 Oct 9;282(5):1033-41. PMID:9753552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1a0q.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1A0Q
  • CSU: Contacts of Structural Units for 1A0Q
  • Likely Quarternary Molecular Structure file(s) for 1A0Q
  • Retrieve 1A0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A0Q from S2C, [Save to disk]
  • View 1A0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A0Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A0Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a0qh2, region H:115-211 [Jmol] [rasmolscript] [script source]
        - Domain d1a0qh1, region H:2-114 [Jmol] [rasmolscript] [script source]
        - Domain d1a0ql2, region L:109-213 [Jmol] [rasmolscript] [script source]
        - Domain d1a0ql1, region L:2-108 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a0q_L] [1a0q] [1a0q_H]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 1A0Q: [IG_like] [IGv ] by SMART
  • Other resources with information on 1A0Q
  • Community annotation for 1A0Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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