1A4E Oxidoreductase date Jan 29, 1998
title Catalase A From Saccharomyces Cerevisiae
authors M.J.Mate
compound source
Molecule: Catalase A
Chain: A, B, C, D
Ec: 1.11.1.6
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Cellular_location: Peroxisomes
symmetry Space Group: P 61 2 2
R_factor 0.154 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.172 184.172 304.977 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand AZI, HEM, SO4 enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • catalase activity
  • peroxidase activity


  • Primary referenceStructure of catalase-A from Saccharomyces cerevisiae., Mate MJ, Zamocky M, Nykyri LM, Herzog C, Alzari PM, Betzel C, Koller F, Fita I, J Mol Biol 1999 Feb 12;286(1):135-49. PMID:9931255
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk]
  • Biological Unit Coordinates (1a4e.pdb1.gz) 330 Kb
  • LPC: Ligand-Protein Contacts for 1A4E
  • CSU: Contacts of Structural Units for 1A4E
  • Likely Quarternary Molecular Structure file(s) for 1A4E
  • Structure Factors (1082 Kb)
  • Retrieve 1A4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A4E from S2C, [Save to disk]
  • Re-refined 1a4e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A4E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A4E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a4ea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1a4eb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1a4ec_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1a4ed_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a4e] [1a4e_B] [1a4e_C] [1a4e_A] [1a4e_D]
  • SWISS-PROT database: [P15202]
  • Domain organization of [CATA_YEAST] by SWISSPFAM
  • Domain found in 1A4E: [Catalase ] by SMART
  • Other resources with information on 1A4E
  • Community annotation for 1A4E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science