1A5F Immunoglobulin date Feb 16, 1998
title Fab Fragment Of A Monoclonal Anti-E-Selectin Antibody
authors A.Rodriguez-Romero, O.Almog, M.Tordova, Z.Randhawa
compound source
Molecule: Monoclonal Anti-E-Selectin 7a9 Antibody (Light Ch
Chain: L
Fragment: Fab Fragment
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: Sp-20 Fusion Mouse-Mouse Hybridoma

Molecule: Monoclonal Anti-E-Selectin 7a9 Antibody (Heavy Ch
Chain: H
Fragment: Fab Fragment

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: Sp-20 Fusion Mouse-Mouse Hybridoma
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.460 83.790 132.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1BBD, 1EO8, 1FRG
Primary referencePrimary and tertiary structures of the Fab fragment of a monoclonal anti-E-selectin 7A9 antibody that inhibits neutrophil attachment to endothelial cells., Rodriguez-Romero A, Almog O, Tordova M, Randhawa Z, Gilliland GL, J Biol Chem 1998 May 8;273(19):11770-5. PMID:9565600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1a5f.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 1A5F
  • Likely Quarternary Molecular Structure file(s) for 1A5F
  • Structure Factors (74 Kb)
  • Retrieve 1A5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A5F from S2C, [Save to disk]
  • Re-refined 1a5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A5F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A5F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a5fh1, region H:1-120 [Jmol] [rasmolscript] [script source]
        - Domain d1a5fh2, region H:121-217 [Jmol] [rasmolscript] [script source]
        - Domain d1a5fl1, region L:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1a5fl2, region L:114-220 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a5f_L] [1a5f_H] [1a5f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1A5F: [IG_like] [IGv ] by SMART
  • Other resources with information on 1A5F
  • Community annotation for 1A5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1A5F from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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