1A6U Immunoglobulin date Mar 03, 1998
title B1-8 Fv Fragment
authors T.Simon, K.Henrick, M.Hirshberg, G.Winter
compound source
Molecule: B1-8 Fv (Light Chain)
Chain: L
Fragment: Fv Fragment
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: C57bl6

Molecule: B1-8 Fv (Heavy Chain)
Chain: H
Fragment: Fv Fragment
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: C57bl6
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.030 85.780 37.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1MFE, 1NQB, 1Q0Y
Gene
Ontology
ChainFunctionProcessComponent
L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1a6u.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1A6U
  • Likely Quarternary Molecular Structure file(s) for 1A6U
  • Retrieve 1A6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A6U from S2C, [Save to disk]
    • View 1A6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1A6U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A6U, from MSDmotif at EBI
  • Genome occurence of 1A6U's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a6uh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1a6ul_, region L [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a6u_L] [1a6u_H] [1a6u]
  • SWISS-PROT database: [P01751] [P01724]
  • Domain organization of [HVM07_MOUSE] [LV1B_MOUSE] by SWISSPFAM
  • Domain found in 1A6U: [IGv ] by SMART
    • Other resources with information on 1A6U
  • Community annotation for 1A6U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1A6U from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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